* using log directory 'd:/Rcompile/CRANpkg/local/3.4/BayClone2.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'BayClone2/DESCRIPTION' ... OK
* this is package 'BayClone2' version '1.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BayClone2' can be installed ... ERROR
Installation failed.
See 'd:/Rcompile/CRANpkg/local/3.4/BayClone2.Rcheck/00install.out' for details.
* DONE
The installation logfile:
* installing *source* package 'BayClone2' ...
** package 'BayClone2' successfully unpacked and MD5 sums checked
** libs

*** arch - i386
make[1]: Entering directory `/cygdrive/d/temp/RtmpGI79n3/R.INSTALL336506d095a21/BayClone2/src-i386'
d:/Compiler/gcc-4.9.3/mingw_32/bin/g++  -I"D:/RCompile/recent/R-3.4.4/include" -DNDEBUG     -I"d:/Compiler/gcc-4.9.3/local330/include"     -O2 -Wall  -mtune=core2 -c BayClone2.cpp -o BayClone2.o
BayClone2.cpp: In function 'void fn_update_L_Z(int, int, int, int, double*, double*, double*, double*, double*, double*, double*, double*, double, double*, double*, double*)':
BayClone2.cpp:1431:33: warning: variable 'z_sc_cur' set but not used [-Wunused-but-set-variable]
         int l_sc_cur, l_sc_new, z_sc_cur, z_sc_new;  
                                 ^
BayClone2.cpp: In function 'double fn_eval_like(double*, double*, double*, double*, double*, double*, int, int)':
BayClone2.cpp:1869:26: error: 'isnan' was not declared in this scope
         if (isnan(loglike)) loglike= R_NegInf;
                          ^
BayClone2.cpp:1869:26: note: suggested alternative:
In file included from D:/RCompile/recent/R-3.4.4/include/R.h:50:0,
                 from BayClone2.cpp:24:
D:/Compiler/gcc-4.9.3/mingw_32/i686-w64-mingw32/include/c++/cmath:837:5: note:   'std::isnan'
     isnan(_Tp __f)
     ^
make[1]: *** [BayClone2.o] Error 1
make[1]: Leaving directory `/cygdrive/d/temp/RtmpGI79n3/R.INSTALL336506d095a21/BayClone2/src-i386'
Warning: running command 'make -f "D:/RCompile/recent/R-3.4.4/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.4.4/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.4.4/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="BayClone2.dll" OBJECTS="BayClone2.o"' had status 2
ERROR: compilation failed for package 'BayClone2'
* removing 'd:/Rcompile/CRANpkg/lib/3.4/BayClone2'
* restoring previous 'd:/Rcompile/CRANpkg/lib/3.4/BayClone2'
In R CMD INSTALL