* using log directory 'd:/Rcompile/CRANpkg/local/3.4/MASS.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'MASS/DESCRIPTION' ... OK * this is package 'MASS' version '7.3-51.4' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MASS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [10s] OK ** checking differences from 'MASS-Ex_i386.Rout' to 'MASS-Ex.Rout.save' ... OK 3a4 > > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') 870c871 < -2.42080777 -0.61510520 -0.03573836 0.81641138 2.15153497 --- > -2.42080780 -0.61510520 -0.03573836 0.81641138 2.15153499 1528c1529 < factor(subject)2 -2.890e-16 2.828e-01 0.000 1.000000 --- > factor(subject)2 -2.300e-15 2.828e-01 0.000 1.000000 2348c2349 < ContHigh 1.271e-15 1.690e-01 0.000 1.000000 --- > ContHigh -1.490e-15 1.690e-01 0.000 1.000000 2920c2921 < 28 26 21 --- > 20 28 27 2926,2927c2927,2928 < [1] s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c c c c c < [39] c c c c c c c c v v v v v v v v v v v v v v v v v v v v v v v v v v v v v --- > [1] s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c c c c c c v > [39] c c c c c c c c c c c c c c v v v v v v v v v v v v v v c v v v v v v v v 2943,2945c2944,2946 < c 5.878571 2.785714 4.278571 < s 4.950000 3.338462 1.457692 < v 6.504762 2.957143 5.500000 --- > c 5.975000 2.810000 4.395000 > s 4.978571 3.432143 1.460714 > v 6.748148 2.988889 5.637037 2949,2951c2950,2952 < Sepal.L. 1.2555097 -0.2975141 < Sepal.W. 0.9085695 2.8401071 < Petal.L. -3.5502485 0.4380715 --- > Sepal.L. 1.1643015 0.68235619 > Sepal.W. 0.7945307 2.23093702 > Petal.L. -3.0421425 0.01236265 2955c2956 < 0.9957 0.0043 --- > 0.9929 0.0071 3172c3173 < -3.631e+01 7.292e-01 4.167e-01 -1.647e-16 --- > -3.631e+01 7.292e-01 4.167e-01 -8.131e-17 3334c3335 < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433 --- > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434 3336c3337 < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395 --- > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396 3338c3339 < 3.81438456 3.73878664 3.51332580 3.39741114 3.47088607 --- > 3.81438456 3.73878664 3.51332581 3.39741115 3.47088608 3340c3341 < 3.72895847 3.31863862 3.37938672 2.96452195 3.58468686 --- > 3.72895847 3.31863862 3.37938673 2.96452195 3.58468686 3342c3343 < 3.39628029 3.36998871 -2.96015461 --- > 3.39628029 3.36998872 -2.96015460 3365c3366 < Achieved convergence tolerance: 4.939e-06 --- > Achieved convergence tolerance: 4.923e-06 3501c3502 < (Intercept) 2.78706 (Intr) --- > (Intercept) 2.78707 (Intr) 4246,4247c4247,4248 < [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c v c c < [39] c c c c c c c c c c c c v v v v v v v v v c v v v v v v v v v v v v v v v --- > [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c c c c > [39] c c c c c c c c c c c c v v v v v v v v v v v v v v v v v c v v v v v v v 4296c4297 < [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c v c c --- > [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c v c c c c c 4348c4349 < [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c v c c --- > [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c v c c c c c 4594c4595 < log10(perf) ~ mmax + cach + chmax --- > log10(perf) ~ syct + mmax + cach + chmax 4598,4601c4599,4601 < 1 82 3.362324 -303.2538 < 2 - syct 3 0.0445369 85 3.406861 -307.9379 < 3 - mmin 3 0.1947053 88 3.601566 -308.3801 < 4 - chmin 3 0.1924133 91 3.793980 -309.1755 --- > 1 82 3.458189 -300.4425 > 2 - chmin 3 0.02548983 85 3.483679 -305.7081 > 3 - mmin 3 0.12039102 88 3.604070 -308.3106 5100c5100 < Achieved convergence tolerance: 4.354e-06 --- > Achieved convergence tolerance: 4.324e-06 Warning message: running command 'diff -bw "D:\temp\RtmpSMKGuA\Rdiffa45304e146e9a" "D:\temp\RtmpSMKGuA\Rdiffb4530158e2843"' had status 1 ** running examples for arch 'x64' ... [12s] OK ** checking differences from 'MASS-Ex_x64.Rout' to 'MASS-Ex.Rout.save' ... OK 3a4 > > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') 2920c2921 < 28 26 21 --- > 20 28 27 2926,2927c2927,2928 < [1] s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c c c c c < [39] c c c c c c c c v v v v v v v v v v v v v v v v v v v v v v v v v v v v v --- > [1] s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c c c c c c v > [39] c c c c c c c c c c c c c c v v v v v v v v v v v v v v c v v v v v v v v 2943,2945c2944,2946 < c 5.878571 2.785714 4.278571 < s 4.950000 3.338462 1.457692 < v 6.504762 2.957143 5.500000 --- > c 5.975000 2.810000 4.395000 > s 4.978571 3.432143 1.460714 > v 6.748148 2.988889 5.637037 2949,2951c2950,2952 < Sepal.L. 1.2555097 -0.2975141 < Sepal.W. 0.9085695 2.8401071 < Petal.L. -3.5502485 0.4380715 --- > Sepal.L. 1.1643015 0.68235619 > Sepal.W. 0.7945307 2.23093702 > Petal.L. -3.0421425 0.01236265 2955c2956 < 0.9957 0.0043 --- > 0.9929 0.0071 4246,4247c4247,4248 < [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c v c c < [39] c c c c c c c c c c c c v v v v v v v v v c v v v v v v v v v v v v v v v --- > [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c c c c > [39] c c c c c c c c c c c c v v v v v v v v v v v v v v v v v c v v v v v v v 4296c4297 < [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c v c c --- > [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c v c c c c c 4348c4349 < [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c c c c v c c --- > [1] s s s s s s s s s s s s s s s s s s s s s s s s s c c c c c c c v c c c c c 4594c4595 < log10(perf) ~ mmax + cach + chmax --- > log10(perf) ~ syct + mmax + cach + chmax 4598,4601c4599,4601 < 1 82 3.362324 -303.2538 < 2 - syct 3 0.0445369 85 3.406861 -307.9379 < 3 - mmin 3 0.1947053 88 3.601566 -308.3801 < 4 - chmin 3 0.1924133 91 3.793980 -309.1755 --- > 1 82 3.458189 -300.4425 > 2 - chmin 3 0.02548983 85 3.483679 -305.7081 > 3 - mmin 3 0.12039102 88 3.604070 -308.3106 Warning message: running command 'diff -bw "D:\temp\Rtmp2L1kHd\Rdiffa9fe083f41eb" "D:\temp\Rtmp2L1kHd\Rdiffb9fe0696a2129"' had status 1 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [5s] OK Running 'confint.R' [1s] Running 'fitdistr.R' [0s] Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK Running 'glm.nb.R' [0s] Running 'hubers.R' [0s] Running 'lme.R' [1s] Running 'polr.R' [1s] Running 'profile.R' [0s] Running 'regression.R' [0s] Comparing 'regression.Rout' to 'regression.Rout.save' ... OK Running 'rlm.R' [0s] Running 'scripts.R' [0s] ** running tests for arch 'x64' ... [5s] OK Running 'confint.R' [0s] Running 'fitdistr.R' [0s] Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK Running 'glm.nb.R' [1s] Running 'hubers.R' [0s] Running 'lme.R' [1s] Running 'polr.R' [1s] Running 'profile.R' [0s] Running 'regression.R' [0s] Comparing 'regression.Rout' to 'regression.Rout.save' ... OK Running 'rlm.R' [0s] Running 'scripts.R' [0s] * checking PDF version of manual ... OK * DONE Status: OK