* using log directory 'd:/Rcompile/CRANpkg/local/3.4/analogue.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'analogue/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'analogue' version '0.17-1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'analogue' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
** checking differences from 'analogue-Ex_i386.Rout' to 'analogue-Ex.Rout.save' ... OK

2c2
< This is vegan 2.5-4
---
> This is vegan 2.5-2
5a6
> > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
2503c2504
<  distance [1:20, 1:10] 1.16 1.45 1.17 1.43 1.59 ...
---
>  'distance' num [1:20, 1:10] 1.16 1.45 1.17 1.43 1.59 ...
2603,2610c2604,2611
< Class 'dist'  atomic [1:45] 0.657 0.768 0.834 0.635 0.778 ...
<   ..- attr(*, "Labels")= chr [1:10] "A" "B" "C" "D" ...
<   ..- attr(*, "Size")= int 10
<   ..- attr(*, "Diag")= logi FALSE
<   ..- attr(*, "Upper")= logi FALSE
<   ..- attr(*, "method")= chr "fuse"
<   ..- attr(*, "weights")= num [1:2] 0.6 0.4
<   ..- attr(*, "call")= language fuse.dist(d1, d2, weights = c(0.6, 0.4))
---
>  'dist' num [1:45] 0.657 0.768 0.834 0.635 0.778 ...
>  - attr(*, "Labels")= chr [1:10] "A" "B" "C" "D" ...
>  - attr(*, "Size")= int 10
>  - attr(*, "Diag")= logi FALSE
>  - attr(*, "Upper")= logi FALSE
>  - attr(*, "method")= chr "fuse"
>  - attr(*, "weights")= num [1:2] 0.6 0.4
>  - attr(*, "call")= language fuse.dist(d1, d2, weights = c(0.6, 0.4))
7010c7011
< (Showing 8 of 166 unconstrained eigenvalues)
---
> (Showed only 8 of all 166 unconstrained eigenvalues)
7049c7050
< (Showing 8 of 165 unconstrained eigenvalues)
---
> (Showed only 8 of all 165 unconstrained eigenvalues)
7109c7110
< (Showing 8 of 166 unconstrained eigenvalues)
---
> (Showed only 8 of all 166 unconstrained eigenvalues)
Warning message:
running command 'diff -bw "D:\temp\Rtmpsz5sj8\Rdiffa28b04ad64aa0" "D:\temp\Rtmpsz5sj8\Rdiffb28b0442073a8"' had status 1 
** running examples for arch 'x64' ... [19s] OK
** checking differences from 'analogue-Ex_x64.Rout' to 'analogue-Ex.Rout.save' ... OK

2c2
< This is vegan 2.5-4
---
> This is vegan 2.5-2
5a6
> > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
2503c2504
<  distance [1:20, 1:10] 1.16 1.45 1.17 1.43 1.59 ...
---
>  'distance' num [1:20, 1:10] 1.16 1.45 1.17 1.43 1.59 ...
2603,2610c2604,2611
< Class 'dist'  atomic [1:45] 0.657 0.768 0.834 0.635 0.778 ...
<   ..- attr(*, "Labels")= chr [1:10] "A" "B" "C" "D" ...
<   ..- attr(*, "Size")= int 10
<   ..- attr(*, "Diag")= logi FALSE
<   ..- attr(*, "Upper")= logi FALSE
<   ..- attr(*, "method")= chr "fuse"
<   ..- attr(*, "weights")= num [1:2] 0.6 0.4
<   ..- attr(*, "call")= language fuse.dist(d1, d2, weights = c(0.6, 0.4))
---
>  'dist' num [1:45] 0.657 0.768 0.834 0.635 0.778 ...
>  - attr(*, "Labels")= chr [1:10] "A" "B" "C" "D" ...
>  - attr(*, "Size")= int 10
>  - attr(*, "Diag")= logi FALSE
>  - attr(*, "Upper")= logi FALSE
>  - attr(*, "method")= chr "fuse"
>  - attr(*, "weights")= num [1:2] 0.6 0.4
>  - attr(*, "call")= language fuse.dist(d1, d2, weights = c(0.6, 0.4))
7010c7011
< (Showing 8 of 166 unconstrained eigenvalues)
---
> (Showed only 8 of all 166 unconstrained eigenvalues)
7049c7050
< (Showing 8 of 165 unconstrained eigenvalues)
---
> (Showed only 8 of all 165 unconstrained eigenvalues)
7109c7110
< (Showing 8 of 166 unconstrained eigenvalues)
---
> (Showed only 8 of all 166 unconstrained eigenvalues)
Warning message:
running command 'diff -bw "D:\temp\RtmpG6Jsyo\Rdiffacde870ec5437" "D:\temp\RtmpG6Jsyo\Rdiffbcde81411f0f"' had status 1 
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [3s] OK
  Running 'test-all.R' [3s]
** running tests for arch 'x64' ... [3s] OK
  Running 'test-all.R' [3s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [22s] OK
* checking PDF version of manual ... OK
* DONE
Status: OK