* using log directory 'd:/Rcompile/CRANpkg/local/3.4/boot.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'boot/DESCRIPTION' ... OK * this is package 'boot' version '1.3-22' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'boot' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [32s] OK * checking differences from 'boot-Ex.Rout' to 'boot-Ex.Rout.save' ... OK 3a4 > > base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv') 127c128 < t1* 1.5203 0.0396 0.21671 --- > t1* 1.5203 0.049024 0.21583 155,156c156,157 < t1* -2.8462 0.002541 1.5467 < t2* 16.8462 -1.457663 6.7591 --- > t1* -2.8462 0.007469 1.5528 > t2* 16.8462 -1.475719 6.7147 189c190 < [1] 0.088157 --- > [1] 0.084223 192c193 < [1] 6.1603 7.2988 --- > [1] 6.1488 7.2619 224c225 < [1] 0.461 --- > [1] 0.446 248,287c249,288 < [1,] 1 1 3 1 1 0 1 0 1 1 < [2,] 0 0 1 3 1 2 1 1 1 0 < [3,] 0 0 0 1 3 2 0 1 2 1 < [4,] 0 2 2 2 0 1 0 1 0 2 < [5,] 1 1 1 0 1 2 0 2 2 0 < [6,] 0 1 2 0 2 1 0 1 2 1 < [7,] 3 0 0 1 1 2 0 1 1 1 < [8,] 0 4 1 1 1 0 1 2 0 0 < [9,] 0 1 4 0 1 0 2 2 0 0 < [10,] 1 1 1 1 1 1 1 2 0 1 < [11,] 0 0 3 0 2 1 1 1 0 2 < [12,] 2 3 1 0 0 1 0 0 2 1 < [13,] 1 0 0 1 2 0 2 1 1 2 < [14,] 0 0 2 3 0 0 2 0 2 1 < [15,] 2 0 1 1 1 1 0 2 1 1 < [16,] 1 1 0 2 2 1 1 1 1 0 < [17,] 1 0 1 2 2 1 2 1 0 0 < [18,] 0 2 0 0 2 2 0 1 1 2 < [19,] 1 1 0 2 0 1 2 0 1 2 < [20,] 0 0 0 1 2 1 1 1 0 4 < [21,] 0 0 2 0 1 1 3 0 0 3 < [22,] 1 3 2 2 0 1 1 0 0 0 < [23,] 0 0 3 1 2 1 2 0 1 0 < [24,] 0 1 1 2 1 2 0 1 0 2 < [25,] 0 0 2 1 0 0 3 2 1 1 < [26,] 0 2 4 1 1 1 0 0 0 1 < [27,] 2 3 1 0 2 0 0 2 0 0 < [28,] 1 1 0 1 1 0 0 4 2 0 < [29,] 2 2 0 1 1 0 1 0 1 2 < [30,] 0 1 0 1 1 2 0 1 3 1 < [31,] 1 2 0 2 2 0 1 1 0 1 < [32,] 1 4 0 1 0 2 0 1 1 0 < [33,] 0 1 0 5 1 0 0 1 1 1 < [34,] 0 2 0 1 3 1 1 1 0 1 < [35,] 0 2 3 1 1 1 0 0 1 1 < [36,] 1 2 1 1 1 1 2 0 1 0 < [37,] 1 1 1 0 0 1 2 2 2 0 < [38,] 2 3 0 3 0 1 0 0 1 0 < [39,] 0 0 1 2 3 0 0 2 1 1 < [40,] 0 1 1 0 3 0 2 2 0 1 --- > [1,] 1 1 0 0 0 2 1 1 3 1 > [2,] 2 2 0 2 0 0 1 0 1 2 > [3,] 0 1 1 1 2 1 2 1 0 1 > [4,] 1 0 1 0 0 1 2 1 1 3 > [5,] 0 3 0 1 0 0 2 0 2 2 > [6,] 0 0 1 1 0 1 4 1 2 0 > [7,] 1 3 1 2 0 0 0 1 2 0 > [8,] 0 2 2 2 0 1 0 1 0 2 > [9,] 3 0 1 0 2 2 1 1 0 0 > [10,] 1 1 0 1 3 0 0 1 2 1 > [11,] 0 1 2 1 3 1 0 0 0 2 > [12,] 1 1 3 1 0 0 0 2 1 1 > [13,] 0 1 0 1 1 3 1 1 1 1 > [14,] 2 0 0 1 1 1 0 1 3 1 > [15,] 1 0 0 0 0 0 5 0 4 0 > [16,] 0 0 1 1 2 1 0 1 4 0 > [17,] 1 0 1 0 5 0 0 1 0 2 > [18,] 1 0 1 0 3 2 1 1 0 1 > [19,] 1 2 2 2 0 1 0 1 1 0 > [20,] 1 1 1 1 2 0 1 0 1 2 > [21,] 2 0 2 1 1 1 0 1 0 2 > [22,] 2 0 1 1 1 0 1 2 1 1 > [23,] 1 2 1 1 0 1 1 1 0 2 > [24,] 3 0 1 0 1 0 1 1 0 3 > [25,] 1 2 1 2 1 1 0 1 1 0 > [26,] 2 0 2 0 1 3 0 1 0 1 > [27,] 2 1 0 2 1 1 0 1 2 0 > [28,] 1 1 2 0 1 0 1 0 3 1 > [29,] 1 2 1 1 1 3 1 0 0 0 > [30,] 2 0 0 2 1 0 0 2 1 2 > [31,] 0 1 1 1 2 0 3 1 0 1 > [32,] 0 0 1 1 1 4 0 0 0 3 > [33,] 1 0 3 2 0 0 0 2 1 1 > [34,] 0 1 0 2 4 1 1 1 0 0 > [35,] 0 1 1 0 2 1 1 0 3 1 > [36,] 3 0 1 0 2 0 1 1 2 0 > [37,] 2 1 1 0 1 0 2 2 1 0 > [38,] 1 0 2 0 1 1 3 1 1 0 > [39,] 1 1 0 2 0 1 1 1 2 1 > [40,] 0 1 2 3 1 1 0 2 0 0 293,332c294,333 < [1,] 7 2 8 10 6 4 9 3 1 5 < [2,] 10 4 6 8 5 3 2 1 9 7 < [3,] 5 10 6 2 3 8 1 9 7 4 < [4,] 10 1 4 8 9 5 3 6 7 2 < [5,] 1 3 5 8 2 9 6 7 10 4 < [6,] 10 4 3 2 1 9 8 5 7 6 < [7,] 2 5 1 4 10 9 3 8 7 6 < [8,] 5 9 6 3 1 2 4 10 8 7 < [9,] 8 2 7 10 4 3 1 6 9 5 < [10,] 1 9 3 2 8 6 7 4 5 10 < [11,] 6 7 10 5 3 9 2 8 4 1 < [12,] 9 5 1 6 10 8 3 2 7 4 < [13,] 9 7 3 1 8 5 4 6 2 10 < [14,] 7 1 3 2 9 6 10 4 5 8 < [15,] 4 9 6 3 2 1 10 8 7 5 < [16,] 9 6 1 7 5 2 8 4 10 3 < [17,] 7 2 3 6 10 4 1 9 5 8 < [18,] 2 4 3 1 5 8 6 10 9 7 < [19,] 4 9 6 1 10 3 7 2 5 8 < [20,] 6 3 7 5 8 4 2 10 1 9 < [21,] 9 10 2 6 7 5 8 4 3 1 < [22,] 10 4 5 9 8 3 1 2 6 7 < [23,] 9 2 5 1 10 4 6 8 7 3 < [24,] 9 4 3 6 8 2 1 10 5 7 < [25,] 10 3 8 2 5 7 1 9 6 4 < [26,] 7 8 3 9 4 1 5 2 10 6 < [27,] 4 8 1 5 3 6 10 9 7 2 < [28,] 8 5 7 4 10 3 2 1 9 6 < [29,] 8 10 2 4 7 3 9 6 1 5 < [30,] 1 5 7 9 3 6 4 10 2 8 < [31,] 10 9 7 5 4 1 2 6 3 8 < [32,] 8 5 1 6 3 7 10 4 9 2 < [33,] 1 6 8 5 2 7 9 4 10 3 < [34,] 8 5 7 1 9 2 6 3 10 4 < [35,] 4 5 9 2 7 6 8 3 1 10 < [36,] 5 9 10 1 3 7 2 8 4 6 < [37,] 8 2 7 9 10 1 3 4 6 5 < [38,] 5 8 1 7 4 3 9 10 6 2 < [39,] 10 7 6 4 8 1 3 5 9 2 < [40,] 2 1 8 3 4 6 9 10 7 5 --- > [1,] 7 8 2 6 9 5 4 3 10 1 > [2,] 1 9 8 6 5 3 4 7 2 10 > [3,] 10 1 6 9 4 5 2 8 3 7 > [4,] 4 5 7 6 3 10 9 8 2 1 > [5,] 10 3 6 7 5 2 8 9 1 4 > [6,] 4 10 8 2 5 6 7 3 9 1 > [7,] 5 8 10 3 2 4 7 1 6 9 > [8,] 3 8 4 9 2 7 1 5 10 6 > [9,] 6 5 1 3 7 2 4 10 9 8 > [10,] 4 9 6 10 8 1 7 3 5 2 > [11,] 5 10 1 8 6 2 3 4 9 7 > [12,] 7 6 1 3 10 2 8 4 5 9 > [13,] 10 8 3 6 9 7 1 5 2 4 > [14,] 6 7 10 1 5 4 8 2 9 3 > [15,] 9 1 5 3 2 8 6 10 7 4 > [16,] 9 5 7 6 4 10 1 3 8 2 > [17,] 1 8 3 10 4 5 9 7 6 2 > [18,] 1 10 5 8 2 4 7 9 6 3 > [19,] 8 2 7 4 9 3 10 6 5 1 > [20,] 10 4 8 6 5 9 1 3 2 7 > [21,] 2 1 10 4 5 7 8 3 6 9 > [22,] 3 1 10 5 2 4 8 6 9 7 > [23,] 8 4 1 10 9 6 2 7 5 3 > [24,] 2 3 7 8 1 6 4 5 10 9 > [25,] 4 8 9 5 10 6 2 7 3 1 > [26,] 1 9 2 10 6 5 4 8 7 3 > [27,] 9 10 7 1 3 8 6 2 4 5 > [28,] 6 7 2 3 4 1 8 9 10 5 > [29,] 5 2 1 9 4 8 7 6 10 3 > [30,] 7 4 6 2 5 1 9 10 3 8 > [31,] 8 5 1 6 7 9 4 3 2 10 > [32,] 3 10 4 5 7 6 1 9 8 2 > [33,] 7 4 9 10 3 5 6 1 2 8 > [34,] 10 6 2 8 7 3 4 9 1 5 > [35,] 7 5 6 1 10 9 2 4 3 8 > [36,] 9 1 8 6 10 5 2 7 3 4 > [37,] 5 6 8 2 4 10 3 9 7 1 > [38,] 5 10 4 3 1 2 8 9 7 6 > [39,] 6 9 7 3 5 1 10 2 8 4 > [40,] 9 3 8 2 6 7 5 1 10 4 363,364c364,365 < 90% ( 1.124, 1.837 ) ( 1.059, 1.740 ) < 95% ( 1.056, 1.905 ) ( 0.932, 1.799 ) --- > 90% ( 1.116, 1.826 ) ( 1.054, 1.742 ) > 95% ( 1.048, 1.894 ) ( 0.956, 1.775 ) 367,368c368,369 < 90% ( 1.301, 1.982 ) ( 1.301, 1.984 ) < 95% ( 1.242, 2.109 ) ( 1.243, 2.110 ) --- > 90% ( 1.299, 1.987 ) ( 1.292, 1.957 ) > 95% ( 1.266, 2.085 ) ( 1.254, 2.058 ) 395c396 < 95% (-5.880, 0.183 ) (-7.059, -0.101 ) --- > 95% (-5.897, 0.190 ) (-7.370, -0.052 ) 418c419 < 95% ( 35.5, 181.9 ) ( 26.0, 170.6 ) --- > 95% ( 32.2, 184.5 ) ( 21.2, 169.4 ) 421c422 < 95% ( 47.9, 294.5 ) ( 45.6, 190.2 ) --- > 95% ( 45.6, 295.8 ) ( 46.8, 195.0 ) 440c441 < 95% ( 4.035, 5.469 ) ( 4.118, 5.546 ) --- > 95% ( 4.015, 5.491 ) ( 4.093, 5.521 ) 443c444 < 95% ( 3.959, 5.808 ) ( 3.820, 5.248 ) --- > 95% ( 3.922, 5.808 ) ( 3.845, 5.273 ) 462c463 < 95% ( 4.069, 5.435 ) ( 4.118, 5.546 ) --- > 95% ( 4.070, 5.435 ) ( 4.093, 5.521 ) 465c466 < 95% ( 3.959, 5.808 ) ( 3.820, 5.248 ) --- > 95% ( 3.922, 5.808 ) ( 3.845, 5.273 ) 552,561d552 < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf 610,627d600 < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf 654,661d626 < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf < Warning in min(surv$time[inds[1 - surv$surv[inds] >= 0.5]]) : < no non-missing arguments to min; returning Inf 730c695 < [1] -6.298101 --- > [1] -11.25369 758c723 < [1] 0.4851491 0.4834641 --- > [1] 0.4911574 0.4887828 777c742 < [1] 0.2264151 0.2217871 --- > [1] 0.2075472 0.2057672 803c768 < -1.13619987 -0.69728210 -0.45301061 -0.27615882 0.02108999 0.14896336 --- > -1.188052737 -0.702204565 -0.447209091 -0.378938644 0.007498044 0.162261064 805c770 < 0.09746429 0.20622340 1.18798956 0.90092079 --- > 0.116272627 0.242543405 1.166357773 1.021472124 833c798 < -2.9326019 -1.3760327 -2.4400720 -1.2175846 0.2795352 -0.8258764 -0.8156286 --- > -2.7187022 -0.9515832 -2.4507504 -1.3409041 0.6167772 -1.2768844 -1.3438236 835c800 < -0.5573332 -1.1275252 -3.1603140 1.2840693 3.5434781 9.3458860 2.6692589 --- > -0.2313133 -1.0504975 -3.1949223 1.2809344 3.7306567 8.9310126 2.7195701 837c802 < 4.4496570 3.6948000 0.9929002 -3.0100985 -3.2237464 -2.5493305 -0.6551745 --- > 4.1111581 3.1632367 1.1507436 -2.2930450 -2.7667452 -2.3645554 -0.2002981 839c804 < 1.9065308 0.4980530 -1.6219628 -1.6980508 -1.4528364 --- > 2.0526618 0.3615873 -1.9421623 -2.1031282 -1.8890234 1797c1762 < [1] 0.01402806 --- > [1] 0.0240481 1803c1768 < [1] 0.02163715 --- > [1] 0.02254379 1806c1771 < [1] 0.02099078 --- > [1] 0.02409135 1809c1774 < [1] 0.02174393 --- > [1] 0.02224027 1818c1783 < [1] -0.009155757 --- > [1] 0.08678105 1858,1859c1823,1824 < Next 375 replicates tilted to -2.821, < Next 375 replicates tilted to 1.636. --- > Next 375 replicates tilted to -2.648, > Next 375 replicates tilted to 1.879. 1869,1871c1834,1836 < t1* 2.846154 -0.4487564 2.500644 < t2* 2.392353 -0.3221155 1.187574 < t3* 0.000000 -0.8862944 2.208945 --- > t1* 2.846154 -0.2728113 2.513218 > t2* 2.392353 -0.2450416 1.187570 > t3* 0.000000 -0.7305799 2.152173 1962,1963c1927,1928 < 2 3 4 5 7 8 10 11 12 13 14 < 16 19 38 4 6 3 1 9 1 1 1 --- > 2 3 4 5 6 7 8 10 11 13 14 > 16 21 41 4 3 5 3 1 3 1 1 1966,1967c1931,1932 < 2 3 4 5 6 7 8 11 12 14 15 < 6 2 22 6 4 6 3 40 7 1 2 --- > 2 3 4 5 6 7 9 10 11 12 13 15 16 > 2 5 24 3 2 8 2 3 38 8 2 1 1 1970,1971c1935,1936 < 2 3 4 5 6 7 8 10 11 13 < 12 18 51 5 2 3 1 2 4 1 --- > 2 3 4 5 6 7 9 11 12 13 15 17 24 > 18 20 41 3 4 1 1 4 1 3 1 1 1 1974,1975c1939,1940 < 2 3 4 5 6 7 8 9 10 11 12 13 15 21 < 2 1 21 4 1 10 4 1 3 45 3 1 2 1 --- > 2 3 4 5 6 7 8 10 11 12 14 15 > 1 3 31 7 1 6 4 3 35 4 3 1 1978,1979c1943,1944 < 2 3 4 5 6 7 8 9 10 11 12 13 14 15 < 4 8 11 2 1 4 2 2 2 54 6 1 1 1 --- > 2 3 4 5 6 7 8 9 10 11 12 13 14 16 > 4 2 11 1 3 6 3 2 2 50 7 6 1 1 Warning message: running command 'diff -bw "D:\temp\RtmpqmRdBH\Rdiffa16a5c2ec45d5b" "D:\temp\RtmpqmRdBH\Rdiffb16a5c345186a"' had status 1 * checking PDF version of manual ... OK * DONE Status: OK