* using log directory 'd:/Rcompile/CRANpkg/local/3.4/cytominer.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'cytominer/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cytominer' version '0.1.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cytominer' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [11s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [15s] ERROR Running 'testthat.R' [14s] Running the tests in 'tests/testthat.R' failed. Complete output: > Sys.setenv("R_TESTS" = "") > > library(testthat) > library(cytominer) Attaching package: 'cytominer' The following object is masked from 'package:stats': aggregate The following object is masked from 'package:base': transform > > test_check("cytominer") -- 1. Error: `aggregate` aggregates data (@test-aggregate.R#15) --------------- near "(": syntax error 1: expect_equal(aggregate(population = data, variables = c("x", "y"), strata = c("g"), operation = "median") %>% dplyr::collect(), data %>% dplyr::group_by(g) %>% dplyr::summarise_at(.funs = dplyr::funs(median), .vars = c("x", "y"))) at testthat/test-aggregate.R:15 2: quasi_label(enquo(object), label, arg = "object") 3: eval_bare(get_expr(quo), get_env(quo)) 4: aggregate(population = data, variables = c("x", "y"), strata = c("g"), operation = "median") %>% dplyr::collect() 5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) 6: eval(quote(`_fseq`(`_lhs`)), env, env) 7: eval(quote(`_fseq`(`_lhs`)), env, env) 8: `_fseq`(`_lhs`) 9: freduce(value, `_function_list`) 10: withVisible(function_list[[k]](value)) ... 13: collect.tbl_sql(.) 14: db_collect(x$src$con, sql, n = n, warn_incomplete = warn_incomplete) 15: db_collect.DBIConnection(x$src$con, sql, n = n, warn_incomplete = warn_incomplete) 16: dbSendQuery(con, sql) 17: dbSendQuery(con, sql) 18: .local(conn, statement, ...) 19: new("SQLiteResult", sql = statement, ptr = result_create(conn@ptr, statement), conn = conn, bigint = conn@bigint) 20: initialize(value, ...) 21: initialize(value, ...) 22: result_create(conn@ptr, statement) == testthat results =========================================================== OK: 18 SKIPPED: 2 WARNINGS: 10 FAILED: 1 1. Error: `aggregate` aggregates data (@test-aggregate.R#15) Error: testthat unit tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [10s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR