* using log directory 'd:/Rcompile/CRANpkg/local/3.4/gstat.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'gstat/DESCRIPTION' ... OK * this is package 'gstat' version '2.0-1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gstat' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [21s] OK ** running examples for arch 'x64' ... [19s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [52s] OK Running 'allier.R' [2s] Comparing 'allier.Rout' to 'allier.Rout.save' ...152c152 < c(-0.000106836, 8.94523e-005) # row 2 --- > c(-0.000106836, 8.94523e-05) # row 2 316c316 < c(-0.000106836, 8.94523e-005) # row 2 --- > c(-0.000106836, 8.94523e-05) # row 2 Running 'blockkr.R' [2s] Comparing 'blockkr.Rout' to 'blockkr.Rout.save' ... OK Running 'covtable.R' [2s] Comparing 'covtable.Rout' to 'covtable.Rout.save' ... OK Running 'cv.R' [2s] Comparing 'cv.Rout' to 'cv.Rout.save' ...13,15d12 < Warning message: < In fit.variogram(x, m, fit.ranges = fit.ranges, ...) : < No convergence after 200 iterations: try different initial values? Running 'cv3d.R' [2s] Comparing 'cv3d.Rout' to 'cv3d.Rout.save' ... OK Running 'fit.R' [2s] Comparing 'fit.Rout' to 'fit.Rout.save' ... OK Running 'krige0.R' [5s] Comparing 'krige0.Rout' to 'krige0.Rout.save' ... OK Running 'line.R' [2s] Comparing 'line.Rout' to 'line.Rout.save' ...28c28 < a 180333 332167 6.1618 0.0080251 --- > a 180333 332167 6.1618 0.008025 66c66 < 1 (0, 0) 6.1618 0.0080251 --- > 1 (0, 0) 6.1618 0.008025 142,143c142,143 < a 180333 332167 6.1618 0.0080251 < b 181000 333000 5.7060 0.0110429 --- > a 180333 332167 6.1618 0.008025 > b 181000 333000 5.7060 0.011043 Running 'merge.R' [2s] Comparing 'merge.Rout' to 'merge.Rout.save' ...190c190 < c(1.88217e-016, 0.5, 4) --- > c( 0, 0.5, 4) 270,273c270,273 < c( 0.5, 4.16334e-017), # row 1 < c( 0.5, -5.55112e-017), # row 2 < c(1.38778e-017, 0.5), # row 3 < c(1.38778e-017, 0.5) # row 4 --- > c( 0.5, 1.38778e-17), # row 1 > c( 0.5, -1.38778e-17), # row 2 > c(2.77556e-17, 0.5), # row 3 > c(-4.16334e-17, 0.5) # row 4 Running 'na.action.R' [1s] Comparing 'na.action.Rout' to 'na.action.Rout.save' ... OK Running 'rings.R' [2s] Comparing 'rings.Rout' to 'rings.Rout.save' ... OK Running 'sim.R' [2s] Comparing 'sim.Rout' to 'sim.Rout.save' ...17,19c17,19 < 2 180310 332189 619.6634 802.32709 678.695 774.714 587.487 767.488 672.648 < 3 180205 331707 253.9294 3.85553 421.666 373.561 130.796 150.749 282.151 < 4 178673 330066 844.6284 1226.33655 561.425 337.763 579.610 620.360 791.288 --- > 2 180310 332189 619.6634 802.32715 678.695 774.714 587.487 767.488 672.648 > 3 180205 331707 253.9294 3.85552 421.666 373.561 130.796 150.749 282.151 > 4 178673 330066 844.6284 1226.33667 561.425 337.763 579.610 620.360 791.288 Running 'stars.R' [9s] Comparing 'stars.Rout' to 'stars.Rout.save' ...54c54 < Linking to GEOS 3.6.1, GDAL 2.2.3, PROJ 4.9.3 --- > Linking to GEOS 3.7.0, GDAL 2.4.0, PROJ 5.2.0 115,116c115,116 < Loaded GDAL runtime: GDAL 2.2.3, released 2017/11/20 < Path to GDAL shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/sf/gdal --- > Loaded GDAL runtime: GDAL 2.4.0, released 2018/12/14 > Path to GDAL shared files: /usr/share/gdal 118,119c118,119 < Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493] < Path to PROJ.4 shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/sf/proj --- > Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520] > Path to PROJ.4 shared files: (autodetected) 147c147 < proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957,0.343988,-1.8774,4.0725 +units=m +no_defs" --- > proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no_defs" 151c151 < proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957,0.343988,-1.8774,4.0725 +units=m +no_defs" --- > proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no_defs" 264c264 < time 1 4 2019-02-25 15:37:25 CET 1 secs POSIXct NA NULL --- > time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct NA NULL 436,437c436,437 < [1] "2019-02-25 15:37:26 CET" "2019-02-25 15:37:27 CET" < [3] "2019-02-25 15:37:28 CET" "2019-02-25 15:37:29 CET" --- > [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" > [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 455c455 < time 1 4 2019-02-25 15:37:25 CET 1 secs POSIXct NA NULL --- > time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct NA NULL Running 'unproj.R' [3s] Comparing 'unproj.Rout' to 'unproj.Rout.save' ...5c5 < rgdal: version: 1.4-3, (SVN revision 828) --- > rgdal: version: 1.3-6, (SVN revision 773) 7,8c7,8 < Loaded GDAL runtime: GDAL 2.2.3, released 2017/11/20 < Path to GDAL shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/rgdal/gdal --- > Loaded GDAL runtime: GDAL 2.3.2, released 2018/09/21 > Path to GDAL shared files: /usr/share/gdal 10,11c10,11 < Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493] < Path to PROJ.4 shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/rgdal/proj --- > Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520] > Path to PROJ.4 shared files: (autodetected) 82c82 < Spam version 2.2-2 (2019-03-07) is loaded. --- > Spam version 2.2-1 (2018-12-20) is loaded. 94,95c94,95 < See https://github.com/NCAR/Fields for < an extensive vignette, other supplements and source code --- > See www.image.ucar.edu/~nychka/Fields for > a vignette and other supplements. Running 'variogram.R' [2s] Comparing 'variogram.Rout' to 'variogram.Rout.save' ... OK Running 'vdist.R' [2s] Comparing 'vdist.Rout' to 'vdist.Rout.save' ...23c23 < 1500 (180260, 331300) 5.641176 1.100095 --- > 1500 (180260, 331300) 5.50671 1.100095 Running 'windst.R' [11s] Comparing 'windst.Rout' to 'windst.Rout.save' ...87c87 < Linking to GEOS 3.6.1, GDAL 2.2.3, PROJ 4.9.3 --- > Linking to GEOS 3.7.0, GDAL 2.4.0, PROJ 5.2.0 101,103d100 < Warning message: < In classInt::classIntervals(na.omit(values), min(nbreaks - 1, n.unq), : < N is large, and some styles will run very slowly; sampling imposed 108,110d104 < Warning message: < In classInt::classIntervals(na.omit(values), min(nbreaks - 1, n.unq), : < N is large, and some styles will run very slowly; sampling imposed 134,136d127 < Warning message: < In classInt::classIntervals(na.omit(values), min(nbreaks - 1, n.unq), : < N is large, and some styles will run very slowly; sampling imposed ** running tests for arch 'x64' ... [57s] OK Running 'allier.R' [2s] Comparing 'allier.Rout' to 'allier.Rout.save' ...152c152 < c(-0.000106836, 8.94523e-005) # row 2 --- > c(-0.000106836, 8.94523e-05) # row 2 316c316 < c(-0.000106836, 8.94523e-005) # row 2 --- > c(-0.000106836, 8.94523e-05) # row 2 Running 'blockkr.R' [3s] Comparing 'blockkr.Rout' to 'blockkr.Rout.save' ... OK Running 'covtable.R' [2s] Comparing 'covtable.Rout' to 'covtable.Rout.save' ... OK Running 'cv.R' [2s] Comparing 'cv.Rout' to 'cv.Rout.save' ... OK Running 'cv3d.R' [2s] Comparing 'cv3d.Rout' to 'cv3d.Rout.save' ... OK Running 'fit.R' [1s] Comparing 'fit.Rout' to 'fit.Rout.save' ... OK Running 'krige0.R' [4s] Comparing 'krige0.Rout' to 'krige0.Rout.save' ... OK Running 'line.R' [2s] Comparing 'line.Rout' to 'line.Rout.save' ... OK Running 'merge.R' [2s] Comparing 'merge.Rout' to 'merge.Rout.save' ...270,273c270,273 < c( 0.5, 1.38778e-017), # row 1 < c( 0.5, -1.38778e-017), # row 2 < c(2.77556e-017, 0.5), # row 3 < c(-4.16334e-017, 0.5) # row 4 --- > c( 0.5, 1.38778e-17), # row 1 > c( 0.5, -1.38778e-17), # row 2 > c(2.77556e-17, 0.5), # row 3 > c(-4.16334e-17, 0.5) # row 4 Running 'na.action.R' [2s] Comparing 'na.action.Rout' to 'na.action.Rout.save' ... OK Running 'rings.R' [2s] Comparing 'rings.Rout' to 'rings.Rout.save' ... OK Running 'sim.R' [1s] Comparing 'sim.Rout' to 'sim.Rout.save' ... OK Running 'stars.R' [8s] Comparing 'stars.Rout' to 'stars.Rout.save' ...54c54 < Linking to GEOS 3.6.1, GDAL 2.2.3, PROJ 4.9.3 --- > Linking to GEOS 3.7.0, GDAL 2.4.0, PROJ 5.2.0 115,116c115,116 < Loaded GDAL runtime: GDAL 2.2.3, released 2017/11/20 < Path to GDAL shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/sf/gdal --- > Loaded GDAL runtime: GDAL 2.4.0, released 2018/12/14 > Path to GDAL shared files: /usr/share/gdal 118,119c118,119 < Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493] < Path to PROJ.4 shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/sf/proj --- > Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520] > Path to PROJ.4 shared files: (autodetected) 147c147 < proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957,0.343988,-1.8774,4.0725 +units=m +no_defs" --- > proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no_defs" 151c151 < proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957,0.343988,-1.8774,4.0725 +units=m +no_defs" --- > proj4string: "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.2369,50.0087,465.658,-0.406857,0.350733,-1.87035,4.0812 +units=m +no_defs" 264c264 < time 1 4 2019-02-25 15:37:25 CET 1 secs POSIXct NA NULL --- > time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct NA NULL 436,437c436,437 < [1] "2019-02-25 15:37:26 CET" "2019-02-25 15:37:27 CET" < [3] "2019-02-25 15:37:28 CET" "2019-02-25 15:37:29 CET" --- > [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" > [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 455c455 < time 1 4 2019-02-25 15:37:25 CET 1 secs POSIXct NA NULL --- > time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct NA NULL Running 'unproj.R' [2s] Comparing 'unproj.Rout' to 'unproj.Rout.save' ...5c5 < rgdal: version: 1.4-3, (SVN revision 828) --- > rgdal: version: 1.3-6, (SVN revision 773) 7,8c7,8 < Loaded GDAL runtime: GDAL 2.2.3, released 2017/11/20 < Path to GDAL shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/rgdal/gdal --- > Loaded GDAL runtime: GDAL 2.3.2, released 2018/09/21 > Path to GDAL shared files: /usr/share/gdal 10,11c10,11 < Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493] < Path to PROJ.4 shared files: D:/temp/RtmpwbQwab/RLIBS_2f82c67024166/rgdal/proj --- > Loaded PROJ.4 runtime: Rel. 5.2.0, September 15th, 2018, [PJ_VERSION: 520] > Path to PROJ.4 shared files: (autodetected) 82c82 < Spam version 2.2-2 (2019-03-07) is loaded. --- > Spam version 2.2-1 (2018-12-20) is loaded. 94,95c94,95 < See https://github.com/NCAR/Fields for < an extensive vignette, other supplements and source code --- > See www.image.ucar.edu/~nychka/Fields for > a vignette and other supplements. Running 'variogram.R' [2s] Comparing 'variogram.Rout' to 'variogram.Rout.save' ... OK Running 'vdist.R' [2s] Comparing 'vdist.Rout' to 'vdist.Rout.save' ...23c23 < 1500 (180260, 331300) 5.641176 1.100095 --- > 1500 (180260, 331300) 5.50671 1.100095 Running 'windst.R' [17s] Comparing 'windst.Rout' to 'windst.Rout.save' ...87c87 < Linking to GEOS 3.6.1, GDAL 2.2.3, PROJ 4.9.3 --- > Linking to GEOS 3.7.0, GDAL 2.4.0, PROJ 5.2.0 101,103d100 < Warning message: < In classInt::classIntervals(na.omit(values), min(nbreaks - 1, n.unq), : < N is large, and some styles will run very slowly; sampling imposed 108,110d104 < Warning message: < In classInt::classIntervals(na.omit(values), min(nbreaks - 1, n.unq), : < N is large, and some styles will run very slowly; sampling imposed 134,136d127 < Warning message: < In classInt::classIntervals(na.omit(values), min(nbreaks - 1, n.unq), : < N is large, and some styles will run very slowly; sampling imposed * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... [15s] OK * checking re-building of vignette outputs ... [56s] OK * checking PDF version of manual ... OK * DONE Status: OK