* using log directory 'd:/Rcompile/CRANpkg/local/3.4/httk.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'httk/DESCRIPTION' ... OK
* this is package 'httk' version '1.9.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'httk' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 16.3Mb
  sub-directories of 1Mb or more:
    R      1.4Mb
    data  12.0Mb
    doc    2.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [31s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [19s] OK
** running examples for arch 'x64' ... [22s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [47s] OK
  Running '1comp_test.R' [9s]
  Comparing '1comp_test.Rout' to '1comp_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
99,103c108,110
< [1] 2.362581
< Warning messages:
< 1: In parameterize_schmitt(chem.cas = chem.cas, chem.name = chem.name,  :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> [1] 2.545046
> Warning message:
> In predict_partitioning_schmitt(parameters = outlist) :
112,115c119,120
< Warning messages:
< 1: In parameterize_schmitt(chem.name = "triclosan") :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> Warning message:
> In predict_partitioning_schmitt(parameters = outlist) :
119c124
< [1] 2.362581
---
> [1] 2.545046
122,124c127
< 1: In parameterize_schmitt(chem.cas = chem.cas, species = species,  :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> 1: In predict_partitioning_schmitt(parameters = outlist) :
126c129
< 3: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
---
> 2: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
128c131
< 4: In parameterize_pbtk(chem.cas = chem.cas, chem.name = chem.name,  :
---
> 3: In parameterize_pbtk(chem.cas = chem.cas, chem.name = chem.name,  :
130c133
< 5: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
---
> 4: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
134c137
< [1] 2.362581
---
> [1] 2.545046
137,139c140
< 1: In parameterize_schmitt(chem.cas = chem.cas, species = species,  :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> 1: In predict_partitioning_schmitt(parameters = outlist) :
141c142
< 3: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
---
> 2: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
143c144
< 4: In parameterize_pbtk(chem.name = "triclosan") :
---
> 3: In parameterize_pbtk(chem.name = "triclosan") :
145c146
< 5: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
---
> 4: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
149c150
< [1] 2.362581
---
> [1] 2.545046
  Running '3comp_test.R' [7s]
  Comparing '3comp_test.Rout' to '3comp_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
  Running '3compss_test.R' [4s]
  Comparing '3compss_test.Rout' to '3compss_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
  Running 'adddata_test.R' [7s]
  Comparing 'adddata_test.Rout' to 'adddata_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
15c17
< NAs introduced by coercion 
---
> In CAS.checksum(this.CAS) : NAs introduced by coercion
  Running 'cheminfo_test.R' [3s]
  Comparing 'cheminfo_test.Rout' to 'cheminfo_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
  Running 'ivive_test.R' [2s]
  Comparing 'ivive_test.Rout' to 'ivive_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
  Running 'other_tests.R' [7s]
  Comparing 'other_tests.Rout' to 'other_tests.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
  Running 'pbtk_test.R' [7s]
  Comparing 'pbtk_test.Rout' to 'pbtk_test.Rout.save' ... OK
** running tests for arch 'x64' ... [54s] OK
  Running '1comp_test.R' [11s]
  Comparing '1comp_test.Rout' to '1comp_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
99,103c108,110
< [1] 2.362581
< Warning messages:
< 1: In parameterize_schmitt(chem.cas = chem.cas, chem.name = chem.name,  :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> [1] 2.545046
> Warning message:
> In predict_partitioning_schmitt(parameters = outlist) :
112,115c119,120
< Warning messages:
< 1: In parameterize_schmitt(chem.name = "triclosan") :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> Warning message:
> In predict_partitioning_schmitt(parameters = outlist) :
119c124
< [1] 2.362581
---
> [1] 2.545046
122,124c127
< 1: In parameterize_schmitt(chem.cas = chem.cas, species = species,  :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> 1: In predict_partitioning_schmitt(parameters = outlist) :
126c129
< 3: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
---
> 2: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
128c131
< 4: In parameterize_pbtk(chem.cas = chem.cas, chem.name = chem.name,  :
---
> 3: In parameterize_pbtk(chem.cas = chem.cas, chem.name = chem.name,  :
130c133
< 5: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
---
> 4: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
134c137
< [1] 2.362581
---
> [1] 2.545046
137,139c140
< 1: In parameterize_schmitt(chem.cas = chem.cas, species = species,  :
<   Fraction unbound = 0, changed to 0.005.
< 2: In predict_partitioning_schmitt(parameters = outlist) :
---
> 1: In predict_partitioning_schmitt(parameters = outlist) :
141c142
< 3: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
---
> 2: In predict_partitioning_schmitt(parameters = schmitt.params, species = species,  :
143c144
< 4: In parameterize_pbtk(chem.name = "triclosan") :
---
> 3: In parameterize_pbtk(chem.name = "triclosan") :
145c146
< 5: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
---
> 4: In available_rblood2plasma(chem.cas = chem.cas, species = species,  :
149c150
< [1] 2.362581
---
> [1] 2.545046
  Running '3comp_test.R' [8s]
  Comparing '3comp_test.Rout' to '3comp_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
  Running '3compss_test.R' [4s]
  Comparing '3compss_test.Rout' to '3compss_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
  Running 'adddata_test.R' [9s]
  Comparing 'adddata_test.Rout' to 'adddata_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
15c17
< NAs introduced by coercion 
---
> In CAS.checksum(this.CAS) : NAs introduced by coercion
  Running 'cheminfo_test.R' [3s]
  Comparing 'cheminfo_test.Rout' to 'cheminfo_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
  Running 'ivive_test.R' [3s]
  Comparing 'ivive_test.Rout' to 'ivive_test.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
4a7,13
> 
> Attaching package: 'httk'
> 
> The following object is masked _by_ '.GlobalEnv':
> 
>     chem.physical_and_invitro.data
> 
  Running 'other_tests.R' [8s]
  Comparing 'other_tests.Rout' to 'other_tests.Rout.save' ...2a3,4
> [Previously saved workspace restored]
> 
  Running 'pbtk_test.R' [8s]
  Comparing 'pbtk_test.Rout' to 'pbtk_test.Rout.save' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [54s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE