* using log directory 'd:/Rcompile/CRANpkg/local/3.4/jtools.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'jtools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'jtools' version '2.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'jtools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s] NOTE
md_table: no visible global function definition for 'isFALSE'
Undefined global functions or variables:
  isFALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'jtools-Ex.R' failed
The error most likely occurred in:

> ### Name: summ.glm
> ### Title: Generalized linear regression summaries with options
> ### Aliases: summ.glm j_summ.glm
> 
> ### ** Examples
> 
>  ## Dobson (1990) Page 93: Randomized Controlled Trial :
>  counts <- c(18,17,15,20,10,20,25,13,12)
>  outcome <- gl(3,1,9)
>  treatment <- gl(3,3)
>  print(d.AD <- data.frame(treatment, outcome, counts))
  treatment outcome counts
1         1       1     18
2         1       2     17
3         1       3     15
4         2       1     20
5         2       2     10
6         2       3     20
7         3       1     25
8         3       2     13
9         3       3     12
>  glm.D93 <- glm(counts ~ outcome + treatment, family = poisson)
> 
>  # Summarize with standardized coefficients
>  summ(glm.D93, scale = TRUE)
MODEL INFO:
Observations: 9
Dependent Variable: counts
Type: Generalized linear model
  Family: poisson 
  Link function: log 

MODEL FIT:
<U+03C7>²(4) = 5.45, p = 0.24
Pseudo-R² (Cragg-Uhler) = 0.46
Pseudo-R² (McFadden) = 0.10
AIC = 56.76, BIC = 57.75 

Standard errors: MLE
Error in isFALSE(row.names) : could not find function "isFALSE"
Calls: <Anonymous> -> print.summ.glm -> print -> md_table
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [49s] ERROR
  Running 'testthat.R' [49s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(jtools)
  > 
  > 
  > test_check("jtools")
  Failed with error:  'there is no package called 'brms''
  Failed with error:  'there is no package called 'rstanarm''
  -- 1. Error: jsumm: partial correlations work (@test-jsumm.R#92)  --------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fit, part.corr = TRUE))) at testthat/test-jsumm.R:92
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fit, part.corr = TRUE))
  11: print.summ.lm(summ(fit, part.corr = TRUE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 2. Error: jsumm: svyglm CIs work (@test-jsumm.R#144)  -----------------------
  could not find function "isFALSE"
  1: expect_output(print(summ(regmodel, confint = TRUE))) at testthat/test-jsumm.R:144
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(regmodel, confint = TRUE))
  11: print.summ.svyglm(summ(regmodel, confint = TRUE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 3. Error: jsumm: svyglm dropping pvals works (@test-jsumm.R#149)  -----------
  could not find function "isFALSE"
  1: expect_output(print(summ(regmodel, pvals = FALSE))) at testthat/test-jsumm.R:149
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(regmodel, pvals = FALSE))
  11: print.summ.svyglm(summ(regmodel, pvals = FALSE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 4. Error: jsumm: svyglm odds ratios (@test-jsumm.R#155)  --------------------
  could not find function "isFALSE"
  1: expect_output(print(summ(regmodel, exp = T))) at testthat/test-jsumm.R:155
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(regmodel, exp = T))
  11: print.summ.svyglm(summ(regmodel, exp = T))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 5. Error: jsumm: merMod CIs work (@test-jsumm.R#168)  -----------------------
  could not find function "isFALSE"
  1: expect_output(print(s)) at testthat/test-jsumm.R:168
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(s)
  11: print.summ.merMod(s)
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 6. Error: jsumm: merMod dropping pvals works (@test-jsumm.R#175)  -----------
  could not find function "isFALSE"
  1: expect_output(print(s)) at testthat/test-jsumm.R:175
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(s)
  11: print.summ.merMod(s)
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 7. Error: summ: all merMod p-value calculation options work (@test-jsumm.R#18
  could not find function "isFALSE"
  1: expect_output(print(s)) at testthat/test-jsumm.R:182
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(s)
  11: print.summ.merMod(s)
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 8. Error: jsumm: lm CIs work (@test-jsumm.R#202)  ---------------------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fit, confint = TRUE))) at testthat/test-jsumm.R:202
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fit, confint = TRUE))
  11: print.summ.lm(summ(fit, confint = TRUE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 9. Error: jsumm: glm CIs work (@test-jsumm.R#207)  --------------------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fitgf, confint = TRUE))) at testthat/test-jsumm.R:207
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fitgf, confint = TRUE))
  11: print.summ.glm(summ(fitgf, confint = TRUE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 10. Error: jsumm: lm dropping pvals works (@test-jsumm.R#212)  --------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fit, pvals = FALSE))) at testthat/test-jsumm.R:212
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fit, pvals = FALSE))
  11: print.summ.lm(summ(fit, pvals = FALSE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 11. Error: jsumm: glm dropping pvals works (@test-jsumm.R#217)  -------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fitgf, pvals = FALSE))) at testthat/test-jsumm.R:217
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fitgf, pvals = FALSE))
  11: print.summ.glm(summ(fitgf, pvals = FALSE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 12. Error: jsumm: lm robust SEs work (@test-jsumm.R#238)  -------------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fit, robust = "HC4m"))) at testthat/test-jsumm.R:238
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fit, robust = "HC4m"))
  11: print.summ.lm(summ(fit, robust = "HC4m"))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 13. Error: jsumm: lm partial corrs works (@test-jsumm.R#243)  ---------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fit, part.corr = T))) at testthat/test-jsumm.R:243
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fit, part.corr = T))
  11: print.summ.lm(summ(fit, part.corr = T))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 14. Error: jsumm: glm robust SEs work (@test-jsumm.R#252)  ------------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fitgf, robust = "HC4m"))) at testthat/test-jsumm.R:252
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fitgf, robust = "HC4m"))
  11: print.summ.glm(summ(fitgf, robust = "HC4m"))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 15. Error: jsumm: lm cluster-robust SEs work (@test-jsumm.R#257)  -----------
  could not find function "isFALSE"
  1: expect_output(print(summ(fit, robust = "HC3", cluster = "Population"))) at testthat/test-jsumm.R:257
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fit, robust = "HC3", cluster = "Population"))
  11: print.summ.lm(summ(fit, robust = "HC3", cluster = "Population"))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 16. Error: jsumm: glm cluster-robust SEs work (@test-jsumm.R#263)  ----------
  could not find function "isFALSE"
  1: expect_output(print(summ(fitgf, robust = T, cluster = clusters))) at testthat/test-jsumm.R:263
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fitgf, robust = T, cluster = clusters))
  11: print.summ.glm(summ(fitgf, robust = T, cluster = clusters))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  -- 17. Error: jsumm: Printing isn't borked (@test-jsumm.R#269)  ----------------
  could not find function "isFALSE"
  1: expect_output(print(summ(fitgf, scale = TRUE))) at testthat/test-jsumm.R:269
  2: quasi_capture(enquo(object), label, capture_output, width = width)
  3: .capture(act$val <- eval_bare(get_expr(.quo), get_env(.quo)), ...)
  4: capture_output_lines(code, print, width = width)
  5: eval_with_output(code, print = print, width = width)
  6: withr::with_output_sink(temp, withVisible(code))
  7: force(code)
  8: withVisible(code)
  9: eval_bare(get_expr(.quo), get_env(.quo))
  10: print(summ(fitgf, scale = TRUE))
  11: print.summ.glm(summ(fitgf, scale = TRUE))
  12: print(md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits))
  13: md_table(ctable, format = getOption("summ.table.format", "multiline"), sig.digits = FALSE, 
         digits = x$digits)
  
  == testthat results  ===========================================================
  OK: 296 SKIPPED: 0 WARNINGS: 0 FAILED: 17
  1. Error: jsumm: partial correlations work (@test-jsumm.R#92) 
  2. Error: jsumm: svyglm CIs work (@test-jsumm.R#144) 
  3. Error: jsumm: svyglm dropping pvals works (@test-jsumm.R#149) 
  4. Error: jsumm: svyglm odds ratios (@test-jsumm.R#155) 
  5. Error: jsumm: merMod CIs work (@test-jsumm.R#168) 
  6. Error: jsumm: merMod dropping pvals works (@test-jsumm.R#175) 
  7. Error: summ: all merMod p-value calculation options work (@test-jsumm.R#182) 
  8. Error: jsumm: lm CIs work (@test-jsumm.R#202) 
  9. Error: jsumm: glm CIs work (@test-jsumm.R#207) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [4s] WARNING
Error in re-building vignettes:
  ...
Quitting from lines 42-46 (effect_plot.Rmd) 
Error: processing vignette 'effect_plot.Rmd' failed with diagnostics:
could not find function "isFALSE"
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 WARNING, 1 NOTE