* using log directory 'd:/Rcompile/CRANpkg/local/3.4/robustbase.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'robustbase/DESCRIPTION' ... OK * this is package 'robustbase' version '0.93-4' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'robustbase' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Functions or methods with usage in documentation object 'CrohnD' but not in code: data Functions or methods with usage in documentation object 'NOxEmissions' but not in code: data Functions or methods with usage in documentation object 'SiegelsEx' but not in code: data Functions or methods with usage in documentation object 'aircraft' but not in code: data Functions or methods with usage in documentation object 'airmay' but not in code: data Functions or methods with usage in documentation object 'alcohol' but not in code: data Functions or methods with usage in documentation object 'ambientNOxCH' but not in code: data Functions or methods with usage in documentation object 'biomassTill' but not in code: data Functions or methods with usage in documentation object 'bushfire' but not in code: data Functions or methods with usage in documentation object 'carrots' but not in code: data Functions or methods with usage in documentation object 'cloud' but not in code: data Functions or methods with usage in documentation object 'coleman' but not in code: data Functions or methods with usage in documentation object 'condroz' but not in code: data Functions or methods with usage in documentation object 'cushny' but not in code: data Functions or methods with usage in documentation object 'delivery' but not in code: data Functions or methods with usage in documentation object 'education' but not in code: data Functions or methods with usage in documentation object 'epilepsy' but not in code: data Functions or methods with usage in documentation object 'exAM' but not in code: data Functions or methods with usage in documentation object 'foodstamp' but not in code: data Functions or methods with usage in documentation object 'hbk' but not in code: data Functions or methods with usage in documentation object 'kootenay' but not in code: data Functions or methods with usage in documentation object 'lactic' but not in code: data Functions or methods with usage in documentation object 'los' but not in code: data Functions or methods with usage in documentation object 'milk' but not in code: data Functions or methods with usage in documentation object 'pension' but not in code: data Functions or methods with usage in documentation object 'phosphor' but not in code: data Functions or methods with usage in documentation object 'pilot' but not in code: data Functions or methods with usage in documentation object 'possumDiv' but not in code: data Functions or methods with usage in documentation object 'pulpfiber' but not in code: data Functions or methods with usage in documentation object 'radarImage' but not in code: data Functions or methods with usage in documentation object 'salinity' but not in code: data Functions or methods with usage in documentation object 'starsCYG' but not in code: data Functions or methods with usage in documentation object 'steamUse' but not in code: data Functions or methods with usage in documentation object 'telef' but not in code: data Functions or methods with usage in documentation object 'toxicity' but not in code: data Functions or methods with usage in documentation object 'vaso' but not in code: data Functions or methods with usage in documentation object 'wagnerGrowth' but not in code: data Functions or methods with usage in documentation object 'wood' but not in code: data * checking Rd \usage sections ... WARNING Undocumented arguments in documentation object 'CrohnD' 'CrohnD' 'package' Objects in \usage without \alias in documentation object 'CrohnD': 'data' Undocumented arguments in documentation object 'NOxEmissions' 'NOxEmissions' 'package' Objects in \usage without \alias in documentation object 'NOxEmissions': 'data' Undocumented arguments in documentation object 'SiegelsEx' 'SiegelsEx' 'package' Objects in \usage without \alias in documentation object 'SiegelsEx': 'data' Undocumented arguments in documentation object 'aircraft' 'aircraft' 'package' Objects in \usage without \alias in documentation object 'aircraft': 'data' Undocumented arguments in documentation object 'airmay' 'airmay' 'package' Objects in \usage without \alias in documentation object 'airmay': 'data' Undocumented arguments in documentation object 'alcohol' 'alcohol' 'package' Objects in \usage without \alias in documentation object 'alcohol': 'data' Undocumented arguments in documentation object 'ambientNOxCH' 'ambientNOxCH' 'package' Objects in \usage without \alias in documentation object 'ambientNOxCH': 'data' Undocumented arguments in documentation object 'biomassTill' 'biomassTill' 'package' Objects in \usage without \alias in documentation object 'biomassTill': 'data' Undocumented arguments in documentation object 'bushfire' 'bushfire' 'package' Objects in \usage without \alias in documentation object 'bushfire': 'data' Undocumented arguments in documentation object 'carrots' 'carrots' 'package' Objects in \usage without \alias in documentation object 'carrots': 'data' Undocumented arguments in documentation object 'cloud' 'cloud' 'package' Objects in \usage without \alias in documentation object 'cloud': 'data' Undocumented arguments in documentation object 'coleman' 'coleman' 'package' Objects in \usage without \alias in documentation object 'coleman': 'data' Undocumented arguments in documentation object 'condroz' 'condroz' 'package' Objects in \usage without \alias in documentation object 'condroz': 'data' Undocumented arguments in documentation object 'cushny' 'cushny' 'package' Objects in \usage without \alias in documentation object 'cushny': 'data' Undocumented arguments in documentation object 'delivery' 'delivery' 'package' Objects in \usage without \alias in documentation object 'delivery': 'data' Undocumented arguments in documentation object 'education' 'education' 'package' Objects in \usage without \alias in documentation object 'education': 'data' Undocumented arguments in documentation object 'epilepsy' 'epilepsy' 'package' Objects in \usage without \alias in documentation object 'epilepsy': 'data' Undocumented arguments in documentation object 'exAM' 'exAM' 'package' Objects in \usage without \alias in documentation object 'exAM': 'data' Undocumented arguments in documentation object 'foodstamp' 'foodstamp' 'package' Objects in \usage without \alias in documentation object 'foodstamp': 'data' Undocumented arguments in documentation object 'hbk' 'hbk' 'package' Objects in \usage without \alias in documentation object 'hbk': 'data' Undocumented arguments in documentation object 'kootenay' 'kootenay' 'package' Objects in \usage without \alias in documentation object 'kootenay': 'data' Undocumented arguments in documentation object 'lactic' 'lactic' 'package' Objects in \usage without \alias in documentation object 'lactic': 'data' Undocumented arguments in documentation object 'los' 'los' 'package' Objects in \usage without \alias in documentation object 'los': 'data' Undocumented arguments in documentation object 'milk' 'milk' 'package' Objects in \usage without \alias in documentation object 'milk': 'data' Undocumented arguments in documentation object 'pension' 'pension' 'package' Objects in \usage without \alias in documentation object 'pension': 'data' Undocumented arguments in documentation object 'phosphor' 'phosphor' 'package' Objects in \usage without \alias in documentation object 'phosphor': 'data' Undocumented arguments in documentation object 'pilot' 'pilot' 'package' Objects in \usage without \alias in documentation object 'pilot': 'data' Undocumented arguments in documentation object 'possumDiv' 'possumDiv' 'package' Objects in \usage without \alias in documentation object 'possumDiv': 'data' Undocumented arguments in documentation object 'pulpfiber' 'pulpfiber' 'package' Objects in \usage without \alias in documentation object 'pulpfiber': 'data' Undocumented arguments in documentation object 'radarImage' 'radarImage' 'package' Objects in \usage without \alias in documentation object 'radarImage': 'data' Undocumented arguments in documentation object 'salinity' 'salinity' 'package' Objects in \usage without \alias in documentation object 'salinity': 'data' Undocumented arguments in documentation object 'starsCYG' 'starsCYG' 'package' Objects in \usage without \alias in documentation object 'starsCYG': 'data' Undocumented arguments in documentation object 'steamUse' 'steamUse' 'package' Objects in \usage without \alias in documentation object 'steamUse': 'data' Undocumented arguments in documentation object 'telef' 'telef' 'package' Objects in \usage without \alias in documentation object 'telef': 'data' Undocumented arguments in documentation object 'toxicity' 'toxicity' 'package' Objects in \usage without \alias in documentation object 'toxicity': 'data' Undocumented arguments in documentation object 'vaso' 'vaso' 'package' Objects in \usage without \alias in documentation object 'vaso': 'data' Undocumented arguments in documentation object 'wagnerGrowth' 'wagnerGrowth' 'package' Objects in \usage without \alias in documentation object 'wagnerGrowth': 'data' Undocumented arguments in documentation object 'wood' 'wood' 'package' Objects in \usage without \alias in documentation object 'wood': 'data' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [17s] OK ** running examples for arch 'x64' ... [22s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [132s] OK Running 'LTS-specials.R' [1s] Running 'MCD-specials.R' [1s] Comparing 'MCD-specials.Rout' to 'MCD-specials.Rout.save' ... OK Running 'MT-tst.R' [8s] Running 'NAcoef.R' [2s] Comparing 'NAcoef.Rout' to 'NAcoef.Rout.save' ... OK Running 'OGK-ex.R' [1s] Comparing 'OGK-ex.Rout' to 'OGK-ex.Rout.save' ... OK Running 'Rsquared.R' [1s] Comparing 'Rsquared.Rout' to 'Rsquared.Rout.save' ... OK Running 'binom-ni-small.R' [1s] Comparing 'binom-ni-small.Rout' to 'binom-ni-small.Rout.save' ... OK Running 'binom-no-x.R' [1s] Running 'comedian-tst.R' [2s] Running 'exact-fit-categorical.R' [0s] Running 'glmrob-1.R' [12s] Running 'glmrob-specials.R' [0s] Running 'huber-etc.R' [0s] Comparing 'huber-etc.Rout' to 'huber-etc.Rout.save' ... OK Running 'lmrob-data.R' [21s] Running 'lmrob-ex12.R' [5s] Running 'lmrob-methods.R' [1s] Comparing 'lmrob-methods.Rout' to 'lmrob-methods.Rout.save' ... OK Running 'lmrob-outlierStats.R' [3s] Running 'lmrob-psifns.R' [4s] Comparing 'lmrob-psifns.Rout' to 'lmrob-psifns.Rout.save' ... OK Running 'm-s-estimator.R' [3s] Running 'mc-etc.R' [1s] Running 'mc-strict.R' [7s] Running 'nlregrob-tst.R' [24s] Running 'nlrob-tst.R' [3s] Running 'plot-ex.R' [1s] Running 'poisson-ex.R' [2s] Running 'psi-rho-etc.R' [1s] Comparing 'psi-rho-etc.Rout' to 'psi-rho-etc.Rout.save' ... OK Running 'small-sample.R' [6s] Comparing 'small-sample.Rout' to 'small-sample.Rout.save' ... OK Running 'subsample.R' [8s] Running 'tlts.R' [1s] Comparing 'tlts.Rout' to 'tlts.Rout.save' ...520,523c520,521 < Warning messages: < 1: In covMcd(X, alpha = alpha, use.correction = use.correction) : < Initial scale 0 because more than 'h' (=16) observations are identical. < 2: In covMcd(X, alpha = alpha, use.correction = use.correction) : --- > 2 identical warnings: > In covMcd(X, alpha = alpha, use.correction = use.correction) : Running 'tmcd.R' [11s] Running 'weights.R' [1s] Comparing 'weights.Rout' to 'weights.Rout.save' ...431c431 < [1] TRUE --- > [1] FALSE 442,443c442,443 < Warning message: < In lf.cov(object, complete = complete, ...) : --- > Warning messages: > 1: In lf.cov(object, complete = complete, ...) : 444a445,446 > 2: In lf.cov(object, complete = complete, ...) : > .vcov.avar1: negative diag() fixed up; consider 'cov=".vcov.w."' instead Running 'wgt-himed-xtra.R' [3s] Running 'wgt-himed.R' [0s] Comparing 'wgt-himed.Rout' to 'wgt-himed.Rout.save' ... OK ** running tests for arch 'x64' ... [137s] OK Running 'LTS-specials.R' [1s] Running 'MCD-specials.R' [1s] Comparing 'MCD-specials.Rout' to 'MCD-specials.Rout.save' ... OK Running 'MT-tst.R' [9s] Running 'NAcoef.R' [2s] Comparing 'NAcoef.Rout' to 'NAcoef.Rout.save' ... OK Running 'OGK-ex.R' [1s] Comparing 'OGK-ex.Rout' to 'OGK-ex.Rout.save' ... OK Running 'Rsquared.R' [1s] Comparing 'Rsquared.Rout' to 'Rsquared.Rout.save' ... OK Running 'binom-ni-small.R' [1s] Comparing 'binom-ni-small.Rout' to 'binom-ni-small.Rout.save' ... OK Running 'binom-no-x.R' [1s] Running 'comedian-tst.R' [2s] Running 'exact-fit-categorical.R' [0s] Running 'glmrob-1.R' [15s] Running 'glmrob-specials.R' [0s] Running 'huber-etc.R' [0s] Comparing 'huber-etc.Rout' to 'huber-etc.Rout.save' ... OK Running 'lmrob-data.R' [19s] Running 'lmrob-ex12.R' [4s] Running 'lmrob-methods.R' [1s] Comparing 'lmrob-methods.Rout' to 'lmrob-methods.Rout.save' ... OK Running 'lmrob-outlierStats.R' [2s] Running 'lmrob-psifns.R' [5s] Comparing 'lmrob-psifns.Rout' to 'lmrob-psifns.Rout.save' ... OK Running 'm-s-estimator.R' [3s] Running 'mc-etc.R' [1s] Running 'mc-strict.R' [7s] Running 'nlregrob-tst.R' [23s] Running 'nlrob-tst.R' [3s] Running 'plot-ex.R' [1s] Running 'poisson-ex.R' [3s] Running 'psi-rho-etc.R' [1s] Comparing 'psi-rho-etc.Rout' to 'psi-rho-etc.Rout.save' ... OK Running 'small-sample.R' [9s] Comparing 'small-sample.Rout' to 'small-sample.Rout.save' ... OK Running 'subsample.R' [7s] Running 'tlts.R' [1s] Comparing 'tlts.Rout' to 'tlts.Rout.save' ...520,523c520,521 < Warning messages: < 1: In covMcd(X, alpha = alpha, use.correction = use.correction) : < Initial scale 0 because more than 'h' (=16) observations are identical. < 2: In covMcd(X, alpha = alpha, use.correction = use.correction) : --- > 2 identical warnings: > In covMcd(X, alpha = alpha, use.correction = use.correction) : Running 'tmcd.R' [9s] Running 'weights.R' [1s] Comparing 'weights.Rout' to 'weights.Rout.save' ...431c431 < [1] TRUE --- > [1] FALSE Running 'wgt-himed-xtra.R' [3s] Running 'wgt-himed.R' [0s] Comparing 'wgt-himed.Rout' to 'wgt-himed.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [62s] OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs