iRefIndex Manager


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Documentation for package ‘iRefR’ version 1.13

Help Pages

convert_complexList_to_MITAB Convert complexList format to MITAB format
convert_edgeList_to_graph Convert iRefIndex/edgeList table to Graph
convert_edgeList_to_MITAB Convert edgeList format to MITAB format
convert_graph_to_edgeList Convert Graph to iRefIndex/edgeList table
convert_MITAB_to_complexList Convert MITAB format to complexList format
convert_MITAB_to_edgeList Convert MITAB format to edgeList format
convert_protein_ID Convert Protein Identifier
create_id_conversion_table Create a Protein ID Conversion Table
get_irefindex Get iRefIndex
merge_complexes_lists Merge tables in complexList Format
select_confidence Select the subset of iRefIndex corresponding to a set of confidence scores
select_database Select iRefIndex Records belonging to given Primary Interaction Databases
select_interaction_type Select Binary||Polymer||Complex in iRefIndex
select_protein Get all iRefIndex records for a given Protein
summary_graph Get Summary Information for a Graph
summary_protein Get Summary Information for a given Protein
summary_table Get Summary Information for a MITAB Table