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A B C D E F G H I L M N O P R S T U V misc
| mrgsolve-package | mrgsolve |
| aboutsolver | About the ODEPACK differential equation solver used by mrgsolve |
| allparam | Create and work with parameter objects |
| as.ev | Coerce an object to class ev |
| as.ev-method | Coerce an object to class ev |
| as.list-method | Coerce a model object to list |
| as.list-method | Coerce an mrgsims object to list |
| as.tbl.mrgsims | Methods for handling output with dplyr verbs |
| assign_ev | Replicate a list of events into a data set |
| as_bmat | Coerce R objects to block or diagonal matrices |
| as_bmat-method | Coerce R objects to block or diagonal matrices |
| as_cmat | Coerce R objects to block or diagonal matrices |
| as_data_frame.mrgsims | Methods for handling output with dplyr verbs |
| as_data_set | Create a simulation data set from ev objects |
| as_data_set-method | Create a simulation data set from ev objects |
| as_deslist | Create a list of designs from a data frame |
| as_dmat | Coerce R objects to block or diagonal matrices |
| as_dmat-method | Coerce R objects to block or diagonal matrices |
| as_tibble.mrgsims | Methods for handling output with dplyr verbs |
| blocks | Return the code blocks from a model specification file |
| blocks-method | Return the code blocks from a model specification file |
| BLOCK_PARSE | Functions to parse code blocks |
| bmat | Create matrices from vector input |
| c-method | Operations with matlist objects |
| c-method | Operations with tgrid objects |
| CAPTURE | Functions to parse code blocks |
| carry.out | Select items to carry into simulated output |
| carry_out | Select items to carry into simulated output |
| cmat | Create matrices from vector input |
| CMT | Functions to parse code blocks |
| cmtn | Get the compartment number from a compartment name |
| cmtn-method | Get the compartment number from a compartment name |
| code | Extract the code from a model |
| data_set | Select and modify a data set for simulation |
| data_set-method | Select and modify a data set for simulation |
| design | Set observation designs for the simulation |
| details | Extract model details |
| distinct.mrgsims | Methods for handling output with dplyr verbs |
| dmat | Create matrices from vector input |
| do.mrgsims | Methods for handling output with dplyr verbs |
| dorender | Render a model to a document |
| do_mrgsim | Simulate from a model object |
| env_eval | Re-evaluate the code in the ENV block |
| env_get | Return model environment |
| env_get_env | Return model environment |
| env_ls | List objects in the model environment |
| env_update | Update objects in model environment |
| ev | Event objects for simulating PK and other interventions |
| ev-method | Event objects for simulating PK and other interventions |
| ev_assign | Replicate a list of events into a data set |
| ev_days | Schedule dosing events on days of the week |
| ev_rep | Replicate an event object |
| ev_repeat | Repeat a block of dosing events |
| ev_rx | Create intervention objects from Rx input |
| ev_rx-method | Create intervention objects from Rx input |
| ev_seq | Schedule a series of event objects |
| exBoot | Example input data sets |
| exdatasets | Example input data sets |
| exidata | Example input data sets |
| expand.ev | Create template data sets for simulation |
| expand.idata | Create template data sets for simulation |
| expand_observations | Insert observations into a data set |
| exTheoph | Example input data sets |
| extran1 | Example input data sets |
| extran2 | Example input data sets |
| extran3 | Example input data sets |
| filter_.ev | dplyr verbs for event objects |
| filter_.mrgsims | Methods for handling output with dplyr verbs |
| filter_sims | Methods for handling output with dplyr verbs |
| FIXED | Functions to parse code blocks |
| group_by.mrgsims | Methods for handling output with dplyr verbs |
| house | Return a pre-compiled, PK/PD model |
| idata_set | Select and modify a idata set for simulation |
| idata_set-method | Select and modify a idata set for simulation |
| INIT | Functions to parse code blocks |
| init | Methods for working with the model compartment list |
| init-method | Methods for working with the model compartment list |
| inventory | Check whether all required parameters needed in a model are present in an object |
| is.mrgmod | Check if an object is a model object |
| is.mrgsims | Check if an object is mrgsim output |
| lctran | Convert select upper case column names to lower case to conform to mrgsolve data expectations |
| loadso | Load the model shared object |
| loadso.mrgmod | Load the model shared object |
| matrix_helpers | Create matrices from vector input |
| mcode | Write, compile, and load model code |
| mcode_cache | Write, compile, and load model code |
| mcRNG | Set RNG to use L'Ecuyer-CMRG |
| modlib | Internal model library |
| modlib_details | modlib: PK/PD Model parameters, compartments, and output variables |
| modlib_pk | modlib: Pharmacokinetic models |
| modlib_pkpd | modlib: Pharmacokinetic / pharmacodynamic models |
| modlib_tmdd | modlib: Target mediated disposition model |
| modlib_viral | modlib: HCV viral dynamics models |
| mread | Read a model specification file |
| mread_cache | Read a model specification file |
| mread_file | Read a model specification file |
| mrgsim | Simulate from a model object |
| mrgsims_dplyr | Methods for handling output with dplyr verbs |
| mrgsim_0 | mrgsim variant functions |
| mrgsim_d | mrgsim variant functions |
| mrgsim_df | Simulate from a model object |
| mrgsim_di | mrgsim variant functions |
| mrgsim_e | mrgsim variant functions |
| mrgsim_ei | mrgsim variant functions |
| mrgsim_i | mrgsim variant functions |
| mrgsim_q | Simulate from a model object with quicker turnaround |
| mrgsim_variants | mrgsim variant functions |
| mrgsolve | mrgsolve |
| mutate.ev | dplyr verbs for event objects |
| mutate.mrgsims | Methods for handling output with dplyr verbs |
| mutate_sims | Methods for handling output with dplyr verbs |
| names-method | Get all names from a model object |
| NMXML | Get THETA, OMEGA and SIGMA from a completed NONMEM run |
| nmxml | Get THETA, OMEGA and SIGMA from a completed NONMEM run |
| numerics_only | Prepare data.frame for input to mrgsim |
| obsaug | Augment observations in the simulated output |
| obsonly | Collect only observations in the simulated output |
| omat | Manipulate OMEGA matrices |
| omat-method | Manipulate OMEGA matrices |
| OMEGA | Manipulate OMEGA matrices |
| omega | Manipulate OMEGA matrices |
| PARAM | Functions to parse code blocks |
| param | Create and work with parameter objects |
| param-method | Create and work with parameter objects |
| parse_rx | Create intervention objects from Rx input |
| PKMODEL | Parse PKMODEL BLOCK data |
| plot-method | Plot method for mrgsims objects |
| plot-method | Generate a quick plot of simulated data |
| plot_mrgsims | Generate a quick plot of simulated data |
| plot_sims | Plot data as an mrgsims object |
| pull.mrgsims | Methods for handling output with dplyr verbs |
| read_nmext | Extract estimates from NONMEM ext file |
| realize_addl | Make addl doses explicit in an event object or data set |
| realize_addl.data.frame | Make addl doses explicit in an event object or data set |
| realize_addl.ev | Make addl doses explicit in an event object or data set |
| render | Render a model to a document |
| render-method | Render a model to a document |
| Req | Request simulated output |
| req | Request simulated output |
| Req-method | Request simulated output |
| req-method | Request simulated output |
| reserved | Reserved words |
| revar | Get model random effect variances and covariances |
| revar-method | Get model random effect variances and covariances |
| see | Print model code to the console |
| see-method | Print model code to the console |
| select.ev | dplyr verbs for event objects |
| select.mrgsims | Methods for handling output with dplyr verbs |
| seq.ev | Schedule a series of event objects |
| SIGMA | Manipulate SIGMA matrices |
| sigma | Manipulate SIGMA matrices |
| simargs | Access or clear arguments for calls to mrgsim |
| slice.mrgsims | Methods for handling output with dplyr verbs |
| smat | Manipulate SIGMA matrices |
| smat-method | Manipulate SIGMA matrices |
| soloc | Return the location of the model shared object |
| solversettings | Optional inputs for DLSODA |
| summarise.each | Methods for handling output with dplyr verbs |
| summarise.mrgsims | Methods for handling output with dplyr verbs |
| tgrids_*_numeric | Operations with tgrid objects |
| tgrids_+_numeric | Operations with tgrid objects |
| tgrid_*_numeric | Operations with tgrid objects |
| tgrid_+_numeric | Operations with tgrid objects |
| THETA | Functions to parse code blocks |
| tscale | Re-scale time in the simulated output |
| update | Update the model object |
| update-method | Update the model object |
| valid_data_set | Validate and prepare a data sets for simulation |
| valid_data_set.matrix | Validate and prepare a data sets for simulation |
| valid_idata_set | Validate and prepare idata data sets for simulation |
| $-method | Select parameter values from a model object |
| *-method | Operations with tgrid objects |
| +-method | Operations with tgrid objects |
| [-method | Select parameter values from a model object |
| [[-method | Select parameter values from a model object |