getpaired |
Filter ions/peaks based on retention time hierarchical clustering, paired mass distances(PMD) and PMD frequency analysis. |
getsda |
Perform structure/reaction directed analysis for peaks list. |
getstd |
Find the independent ions for each retention time hierarchical clustering based on PMD relationship within each retention time cluster and isotope and return the index of the std data for each retention time cluster. |
globalstd |
GlobalStd algorithm with structure/reaction directed analysis |
plotpaired |
Plot the mass pairs and high frequency mass distances |
plotrtg |
Plot the retention time group |
plotstd |
Plot the std mass from GlobalStd algorithm |
plotstdrt |
Plot the std mass from GlobalStd algorithm in certain retention time groups |
plotstdsda |
Plot the std mass from GlobalStd algorithm in structure directed analysis(SDA) groups |
runPMD |
Shiny application for PMD analysis |
sda |
A dataset containing common Paired mass distances of substructure, ions replacements, and reaction |
spmeinvivo |
A peaks list dataset containing 9 samples from 3 fish with triplicates samples for each fish from LC-MS. |