Inference Tool for Antibody Haplotype


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Documentation for package ‘rabhit’ version 0.1.0.0

Help Pages

rabhit-package The RAbHIT package
createFullHaplotype Anchor gene haplotype inference
deletionHeatmap Graphical output of single chromosome deletions
deletionsByBinom Double chromosome deletion by relative gene usage
deletionsByVpooled Single chromosomal D or J gene deletions inferred by the V pooled method
hapDendo Hierarchical clustering of haplotypes graphical output
hapHeatmap Graphical output of alleles division by chromosome
HDGERM Human IGHD germlines
HJGERM Human IGHJ germlines
HVGERM Human IGHV germlines
nonReliableVGenes Detect non reliable gene assignment
plotDeletionsByBinom Graphical output of double chromosome deletions
plotDeletionsByVpooled Graphical output for single chromosome D or J gene deletions according to V pooled method
plotHaplotype Graphical output of an inferred haplotype
rabhit The RAbHIT package
samplesHaplotype Example haplotype inference results
samples_db Example IGH human naive b-cell repertiore