rehh-package |
Searching for footprints of selection using "Extended Haplotype Homozygosity" based statistics |
bifurcation.diagram |
plot of an haplotype bifurcation diagram |
calc_ehh |
EHH and iHH computations at a given core SNP |
calc_ehhs |
EHHS and iES computations at a given core SNP |
data2haplohh |
Converting data into an object of class haplohh |
distribplot |
Distribution of standardized iHS, Rsb or XP-EHH values |
haplohh-class |
Class '"haplohh"' |
haplohh_cgu_bta12 |
Example of an 'haplohh' object |
ies2rsb |
Compute Rsb (standardized ratio of iES between two populations) |
ies2xpehh |
Compute XP-EHH (standardized ratio of iES from two populations) as described in Sabeti et al. (2007) |
ihh2ihs |
Compute iHS (standardized iHH) |
ihsplot |
Plot iHS over a genome |
make.example.files |
Creating example input files |
rehh |
Searching for footprints of selection using "Extended Haplotype Homozygosity" based statistics |
rsbplot |
Plot Rsb over a genome |
scan_hh |
Computing EHH based statistics over a whole chromosome |
xpehhplot |
Plot XP-EHH over a genome |