Searching for Footprints of Selection using "Extended Haplotype Homozygosity" Based Tests


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Documentation for package ‘rehh’ version 2.0.4

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rehh-package Searching for footprints of selection using "Extended Haplotype Homozygosity" based statistics
bifurcation.diagram plot of an haplotype bifurcation diagram
calc_ehh EHH and iHH computations at a given core SNP
calc_ehhs EHHS and iES computations at a given core SNP
data2haplohh Converting data into an object of class haplohh
distribplot Distribution of standardized iHS, Rsb or XP-EHH values
haplohh-class Class '"haplohh"'
haplohh_cgu_bta12 Example of an 'haplohh' object
ies2rsb Compute Rsb (standardized ratio of iES between two populations)
ies2xpehh Compute XP-EHH (standardized ratio of iES from two populations) as described in Sabeti et al. (2007)
ihh2ihs Compute iHS (standardized iHH)
ihsplot Plot iHS over a genome
make.example.files Creating example input files
rehh Searching for footprints of selection using "Extended Haplotype Homozygosity" based statistics
rsbplot Plot Rsb over a genome
scan_hh Computing EHH based statistics over a whole chromosome
xpehhplot Plot XP-EHH over a genome