Grouped Sampling

John Mount

2019-04-24

This is an example of the current idiomatic way to sample per-group using rqdatatable or rquery.

The idea is to use a random order and per-group row numbering. This works well in-memory.

library("rqdatatable")

## Loading required package: rquery

n <- 100000
set.seed(325235)
d <- data.frame(
  x = sample(letters, n, replace = TRUE),
  y = sample(letters, n, replace = TRUE),
  z = sample(letters, n, replace = TRUE),
  id = seq_len(n),
  stringsAsFactors = FALSE)

grouping_vars <- qc(x, y, z)

sample_ops <- local_td(d) %.>%
  extend_nse(., one := 1) %.>%
  extend_nse(., ord := runif(sum(one))) %.>%
  pick_top_k(., 
             k = 5,
             partitionby = grouping_vars,
             orderby = "ord")

samp <- ex_data_table(sample_ops)
head(samp)

##    x y z    id one        ord row_number
## 1: a a a   909   1 0.04891075          1
## 2: a a a  6960   1 0.08585692          2
## 3: a a a 27931   1 0.20268071          3
## 4: a a a 13108   1 0.25831462          4
## 5: a a a 67683   1 0.66286079          5
## 6: a a b  4168   1 0.01941657          1

And the database version is very similar (on databases with window functions).

The main issue is landing the random order without having to translate the R runif(sum(one)) code into database operations.

library("rquery")

db <- DBI::dbConnect(RPostgreSQL::PostgreSQL(),
                     host = 'localhost',
                     port = 5432,
                     user = 'johnmount',
                     password = '')

rq_copy_to(db, "d", d,
           overwrite = TRUE,
           temporary = TRUE)

sample_ops <- local_td(d) %.>%
  extend_nse(., ord := random()) %.>%
  pick_top_k(., 
             k = 5,
             partitionby = grouping_vars,
             orderby = "ord")

samp <- execute(db, sample_ops, allow_executor = FALSE)

DBI::dbDisconnect(db)

The main issue is the different notation used in each pipeline to land the random column.

We can unify this by supplying translations from some common database notations (such as no-argument random()) to the data.table implementation.

sample_ops <- local_td(d) %.>%
  extend_nse(., ord := random()) %.>%
  pick_top_k(., 
             k = 5,
             partitionby = grouping_vars,
             orderby = "ord")

samp <- ex_data_table(sample_ops)
head(samp)

##    x y z    id          ord row_number
## 1: a a a  6960 0.0623182002          1
## 2: a a a 58463 0.3283458794          2
## 3: a a a 27931 0.5018074675          3
## 4: a a a 67683 0.8144518612          4
## 5: a a a 13108 0.9170139052          5
## 6: a a b 39807 0.0001303996          1

The translations available are listed in the package variable rqdatatable:::data_table_extend_fns.

str(rqdatatable:::data_table_extend_fns)

## List of 4
##  $ rank      :List of 2
##   ..$ data.table_version: chr "cumsum(rqdatatable_temp_one_col)"
##   ..$ need_one_col      : logi TRUE
##  $ row_number:List of 2
##   ..$ data.table_version: chr "cumsum(rqdatatable_temp_one_col)"
##   ..$ need_one_col      : logi TRUE
##  $ random    :List of 2
##   ..$ data.table_version: chr "runif(.N)"
##   ..$ need_one_col      : logi FALSE
##  $ rand      :List of 2
##   ..$ data.table_version: chr "runif(.N)"
##   ..$ need_one_col      : logi FALSE