Generalized Survival Models


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Documentation for package ‘rstpm2’ version 1.4.5

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Rstpm2-package Flexible parametric survival models.
aft Parametric accelerated failure time model with smooth time functions
aft-class Class "stpm2" ~~~
AIC-method Class "pstpm2"
AICc-method Class "pstpm2"
anova-method Class "pstpm2"
BIC-method Class "pstpm2"
brcancer German breast cancer data from Stata.
coef<- Generic method to update the coef in an object.
colon Colon cancer.
confint.predictnl Estimation of standard errors using the numerical delta method.
cox.tvc Test for a time-varying effect in the 'coxph' model
eform S3 method for to provide exponentiated coefficents with confidence intervals.
eform-method Class "pstpm2"
eform-method Class "stpm2" ~~~
eform.stpm2 S3 method for to provide exponentiated coefficents with confidence intervals.
grad gradient function (internal function)
incrVar Utility that returns a function to increment a variable in a data-frame.
legendre.quadrature.rule.200 Legendre quadrature rule for n=200.
lhs Internal functions for the rstpm2 package.
lhs<- Internal functions for the rstpm2 package.
lines-method Class "pstpm2"
lines-method Class "stpm2" ~~~
lines.pstpm2 S3 methods for lines
lines.stpm2 S3 methods for lines
nsx Generate a Basis Matrix for Natural Cubic Splines (with eXtensions)
nsxD Generate a Basis Matrix for the first derivative of Natural Cubic Splines (with eXtensions)
numDeltaMethod Calculate numerical delta method for non-linear predictions.
plot-method Class "stpm2" ~~~
plot-method plots for an stpm2 fit
plot-method Class "pstpm2"
plot-method Class "stpm2" ~~~
plot-method Class '"tvcCoxph"'
plot-methods plots for an stpm2 fit
popmort Background mortality rates for the colon dataset.
predict-method Class "stpm2" ~~~
predict-method Predicted values for an stpm2 or pstpm2 fit
predict-methods Predicted values for an stpm2 or pstpm2 fit
predict.formula Estimation of standard errors using the numerical delta method.
predict.nsx Evaluate a Spline Basis
predictnl Estimation of standard errors using the numerical delta method.
predictnl-method Class "stpm2" ~~~
predictnl-method ~~ Methods for Function predictnl ~~
predictnl-method Class "pstpm2"
predictnl-method Class "stpm2" ~~~
predictnl-methods ~~ Methods for Function predictnl ~~
predictnl.default Estimation of standard errors using the numerical delta method.
predictnl.lm Estimation of standard errors using the numerical delta method.
print.predictnl Estimation of standard errors using the numerical delta method.
pstpm2 Penalised generalised survival model
pstpm2-class Class "pstpm2"
qAICc-method Class "pstpm2"
residuals-method Residual values for an stpm2 or pstpm2 fit
residuals-methods Residual values for an stpm2 or pstpm2 fit
rhs Internal functions for the rstpm2 package.
rhs<- Internal functions for the rstpm2 package.
Rstpm2 Flexible parametric survival models.
stpm2 Fully parametric generalised survival model
stpm2-class Class "stpm2" ~~~
summary-method Class "pstpm2"
summary-method Class "stpm2" ~~~
tvcCoxph-class Class '"tvcCoxph"'
vuniroot Vectorised One Dimensional Root (Zero) Finding