Fossil Analysis


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Documentation for package ‘velociraptr’ version 1.0

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abundanceMatrix Create a community matrix of taxon abundances.
adaptiveExtinction Adaptive Beta Functions
adaptiveExtinction,adaptiveOrigination,thetaNegative,thetaPositive,lambdaNegative,lambdaPositive Adaptive Beta Functions
adaptiveOrigination Adaptive Beta Functions
ageRanges Find the age range for each taxon in a dataframe
cleanTaxonomy Clean taxonomic names
completeTurnovers Multiplicative Diversity Partitioning
constrainAges Constrain a dataset to only occurrences within a certain age-range
constrainAges,multiplyAges Constrain a dataset to only occurrences within a certain age-range
cullMatrix Cull rare taxa and depauperate samples
cullMatrix,errorMatrix,culltaxa,cullSamples,occurrencesFlag,diversityFlag,softCull,softTaxa,softSamples Cull rare taxa and depauperate samples
downloadPaleogeography Downloads paleogeographic maps
downloadPBDB Download Occurrences from the Paleobiology Database
downloadTime Download geologic timescale
meanAlpha Additive Diversity Partitioning functions
multiplicativeBeta Multiplicative Diversity Partitioning
multiplicativeBeta,completeTurnovers,notEndemic Multiplicative Diversity Partitioning
multiplyAges Constrain a dataset to only occurrences within a certain age-range
notEndemic Multiplicative Diversity Partitioning
presenceMatrix Create a matrix of presences and absences
sampleBeta Additive Diversity Partitioning functions
subsampleEvenness Shareholder Quorum Subsampling
subsampleIndividuals Iterative Rarefaction
taxonAlpha Additive Diversity Partitioning functions
taxonAlpha,meanAlpha,taxonBeta,sampleBeta,totalGamma Additive Diversity Partitioning functions
taxonBeta Additive Diversity Partitioning functions
totalBeta Additive Diversity Partitioning functions
totalGamma Additive Diversity Partitioning functions
uniformExtinction Uniform Confidence Intervals
uniformExtinction,uniformOrigination Uniform Confidence Intervals
uniformOrigination Uniform Confidence Intervals