* using log directory 'd:/Rcompile/CRANpkg/local/3.6/CDSeq.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'CDSeq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CDSeq' version '1.0.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CDSeq' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.6/CDSeq.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'CDSeq' ... ** package 'CDSeq' successfully unpacked and MD5 sums checked ** using staged installation ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-i386' d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c GibbsSampler.cpp -o GibbsSampler.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c Hungarian.cpp -o Hungarian.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c cokus.cpp -o cokus.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c hungarian_Rcpp.cpp -o hungarian_Rcpp.o d:/Compiler/gcc-4.9.3/mingw_32/bin/g++ -shared -s -static-libgcc -o CDSeq.dll tmp.def GibbsSampler.o Hungarian.o RcppExports.o cokus.o hungarian_Rcpp.o -fopenmp -LD:/RCompile/recent/R-3.6.3/bin/i386 -lRlapack -LD:/RCompile/recent/R-3.6.3/bin/i386 -lRblas -lgfortran -lm -lquadmath -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-3.6.3/bin/i386 -lR make[1]: Leaving directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-i386' make[1]: Entering directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-i386' make[1]: Leaving directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-i386' installing to d:/Rcompile/CRANpkg/lib/3.6/00LOCK-CDSeq/00new/CDSeq/libs/i386 *** arch - x64 make[1]: Entering directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-x64' d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c GibbsSampler.cpp -o GibbsSampler.o d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c Hungarian.cpp -o Hungarian.o d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c cokus.cpp -o cokus.o d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -std=gnu++11 -I"D:/RCompile/recent/R-3.6.3/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.6/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.6/RcppArmadillo/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -O2 -Wall -mtune=core2 -c hungarian_Rcpp.cpp -o hungarian_Rcpp.o d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o CDSeq.dll tmp.def GibbsSampler.o Hungarian.o RcppExports.o cokus.o hungarian_Rcpp.o -fopenmp -LD:/RCompile/recent/R-3.6.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-3.6.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-3.6.3/bin/x64 -lR make[1]: Leaving directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-x64' make[1]: Entering directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-x64' make[1]: Leaving directory `/cygdrive/d/temp/RtmpoVQxNu/R.INSTALL169104d296839/CDSeq/src-x64' installing to d:/Rcompile/CRANpkg/lib/3.6/00LOCK-CDSeq/00new/CDSeq/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error: object 'markvario' is not exported by 'namespace:spatstat' Execution halted runtime error R6031 - Attempt to initialize the CRT more than once. This indicates a bug in your application. ERROR: lazy loading failed for package 'CDSeq' * removing 'd:/Rcompile/CRANpkg/lib/3.6/CDSeq' * restoring previous 'd:/Rcompile/CRANpkg/lib/3.6/CDSeq'