* using log directory 'd:/Rcompile/CRANpkg/local/3.6/InformativeCensoring.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'InformativeCensoring/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'InformativeCensoring' version '0.3.5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'InformativeCensoring' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [4s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [259s] ERROR Running 'testthat.R' [259s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library("InformativeCensoring") Loading required package: survival Attaching package: 'InformativeCensoring' The following object is masked from 'package:survival': cox.zph > > test_check("InformativeCensoring") == Failed tests ================================================================ -- Failure (test-gammaImputedata.R:25:3): GammaImputeSet_object ---------------- c("matrix", "array") not equal to class(imputed.data.sets$impute.time). Lengths differ: 2 is not 1 -- Failure (test-gammaImputedata.R:26:3): GammaImputeSet_object ---------------- c("matrix", "array") not equal to class(imputed.data.sets$impute.event). Lengths differ: 2 is not 1 -- Failure (test-gammaStat.R:115:3): GammaStatSet ------------------------------ c("matrix", "array") not equal to class(ans$statistics$estimates). Lengths differ: 2 is not 1 -- Failure (test-gammaStat.R:116:3): GammaStatSet ------------------------------ c("matrix", "array") not equal to class(ans$statistics$vars). Lengths differ: 2 is not 1 -- Failure (test-gammaStat.R:140:3): GammaStatSet_multiplecovar ---------------- c("matrix", "array") not equal to class(ans$statistics$estimates). Lengths differ: 2 is not 1 -- Failure (test-gammaStat.R:141:3): GammaStatSet_multiplecovar ---------------- c("matrix", "array") not equal to class(ans$statistics$vars). Lengths differ: 2 is not 1 -- Failure (test-gammaStat.R:171:3): summary_1_covar --------------------------- c("matrix", "array") not equal to class(ans). Lengths differ: 2 is not 1 -- Failure (test-scoreExtract.R:32:3): ScoreImputeSet_extract ------------------ c("matrix", "array") not equal to class(ans$impute.time). Lengths differ: 2 is not 1 -- Failure (test-scoreExtract.R:33:3): ScoreImputeSet_extract ------------------ c("matrix", "array") not equal to class(ans$impute.event). Lengths differ: 2 is not 1 -- Failure (test-scoreStat.R:168:3): Logrank_Wilcoxon_usersupplied_formula ----- a$statistic not equal to `/`(...). 1/1 mismatches [1] -0.0292 - -1.53 == 1.5 [ FAIL 10 | WARN 0 | SKIP 0 | PASS 491 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR