* using log directory 'd:/Rcompile/CRANpkg/local/3.6/MonoPhy.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'MonoPhy/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MonoPhy' version '1.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MonoPhy' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [8s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [6s] ERROR
  Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > test_check("MonoPhy")
  Loading required package: MonoPhy
  Loading required package: ape
  Loading required package: phytools
  Loading required package: maps
  Loading required package: phangorn
  Loading required package: RColorBrewer
  Loading required package: taxize
  == Failed tests ================================================================
  -- Failure (test_solutions.R:11:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[1, 1]) not equal to 32.
  1/1 mismatches
  [1] 3 - 32 == -29
  -- Failure (test_solutions.R:12:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[2, 1]) not equal to 9.
  1/1 mismatches
  [1] 6 - 9 == -3
  -- Failure (test_solutions.R:13:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[3, 1]) not equal to 6.
  1/1 mismatches
  [1] 4 - 6 == -2
  -- Failure (test_solutions.R:14:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[4, 1]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:15:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[5, 1]) not equal to 7.
  1/1 mismatches
  [1] 5 - 7 == -2
  -- Failure (test_solutions.R:17:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[1, 2]) not equal to 77.
  1/1 mismatches
  [1] 6 - 77 == -71
  -- Failure (test_solutions.R:18:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[2, 2]) not equal to 25.
  1/1 mismatches
  [1] 4 - 25 == -21
  -- Failure (test_solutions.R:19:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[3, 2]) not equal to 35.
  1/1 mismatches
  [1] 5 - 35 == -30
  -- Failure (test_solutions.R:20:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[4, 2]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:21:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[5, 2]) not equal to 11.
  1/1 mismatches
  [1] 1 - 11 == -10
  -- Failure (test_solutions.R:22:3): Regular solution is accurate ---------------
  as.numeric(controlsolution[[1]]$summary[6, 2]) not equal to 2.
  1/1 mismatches
  [1] 3 - 2 == 1
  -- Failure (test_solutions.R:48:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[1, 1]) not equal to 32.
  1/1 mismatches
  [1] 3 - 32 == -29
  -- Failure (test_solutions.R:49:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[2, 1]) not equal to 9.
  1/1 mismatches
  [1] 6 - 9 == -3
  -- Failure (test_solutions.R:50:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[3, 1]) not equal to 6.
  1/1 mismatches
  [1] 4 - 6 == -2
  -- Failure (test_solutions.R:51:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[4, 1]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:52:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[5, 1]) not equal to 7.
  1/1 mismatches
  [1] 5 - 7 == -2
  -- Failure (test_solutions.R:54:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[1, 2]) not equal to 77.
  1/1 mismatches
  [1] 6 - 77 == -71
  -- Failure (test_solutions.R:55:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[2, 2]) not equal to 25.
  1/1 mismatches
  [1] 4 - 25 == -21
  -- Failure (test_solutions.R:56:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[3, 2]) not equal to 35.
  1/1 mismatches
  [1] 5 - 35 == -30
  -- Failure (test_solutions.R:57:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[4, 2]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:58:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[5, 2]) not equal to 11.
  1/1 mismatches
  [1] 1 - 11 == -10
  -- Failure (test_solutions.R:59:3): Multifurcating solution1 is accurate -------
  as.numeric(solution1[[1]]$summary[6, 2]) not equal to 2.
  1/1 mismatches
  [1] 3 - 2 == 1
  -- Failure (test_solutions.R:85:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[1, 1]) not equal to 32.
  1/1 mismatches
  [1] 3 - 32 == -29
  -- Failure (test_solutions.R:86:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[2, 1]) not equal to 8.
  1/1 mismatches
  [1] 5 - 8 == -3
  -- Failure (test_solutions.R:87:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[3, 1]) not equal to 7.
  1/1 mismatches
  [1] 4 - 7 == -3
  -- Failure (test_solutions.R:88:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[4, 1]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:89:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[5, 1]) not equal to 8.
  1/1 mismatches
  [1] 5 - 8 == -3
  -- Failure (test_solutions.R:91:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[1, 2]) not equal to 77.
  1/1 mismatches
  [1] 6 - 77 == -71
  -- Failure (test_solutions.R:92:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[2, 2]) not equal to 23.
  1/1 mismatches
  [1] 4 - 23 == -19
  -- Failure (test_solutions.R:93:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[3, 2]) not equal to 37.
  1/1 mismatches
  [1] 5 - 37 == -32
  -- Failure (test_solutions.R:94:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[4, 2]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:95:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[5, 2]) not equal to 12.
  1/1 mismatches
  [1] 1 - 12 == -11
  -- Failure (test_solutions.R:96:3): Multifurcating solution2 is accurate -------
  as.numeric(solution2[[1]]$summary[6, 2]) not equal to 2.
  1/1 mismatches
  [1] 3 - 2 == 1
  -- Failure (test_solutions.R:122:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[1, 1]) not equal to 32.
  1/1 mismatches
  [1] 3 - 32 == -29
  -- Failure (test_solutions.R:123:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[2, 1]) not equal to 9.
  1/1 mismatches
  [1] 5 - 9 == -4
  -- Failure (test_solutions.R:124:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[3, 1]) not equal to 6.
  1/1 mismatches
  [1] 4 - 6 == -2
  -- Failure (test_solutions.R:125:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[4, 1]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:126:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[5, 1]) not equal to 9.
  1/1 mismatches
  [1] 5 - 9 == -4
  -- Failure (test_solutions.R:128:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[1, 2]) not equal to 77.
  1/1 mismatches
  [1] 6 - 77 == -71
  -- Failure (test_solutions.R:129:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[2, 2]) not equal to 25.
  1/1 mismatches
  [1] 4 - 25 == -21
  -- Failure (test_solutions.R:130:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[3, 2]) not equal to 35.
  1/1 mismatches
  [1] 5 - 35 == -30
  -- Failure (test_solutions.R:131:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[4, 2]) not equal to 17.
  1/1 mismatches
  [1] 2 - 17 == -15
  -- Failure (test_solutions.R:132:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[5, 2]) not equal to 13.
  1/1 mismatches
  [1] 1 - 13 == -12
  -- Failure (test_solutions.R:133:3): Multifurcating solution3 is accurate ------
  as.numeric(solution3[[1]]$summary[6, 2]) not equal to 2.
  1/1 mismatches
  [1] 3 - 2 == 1
  
  [ FAIL 44 | WARN 0 | SKIP 0 | PASS 52 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [10s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR