* using log directory 'd:/Rcompile/CRANpkg/local/3.6/bbmle.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'bbmle/DESCRIPTION' ... OK * this is package 'bbmle' version '1.0.23.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bbmle' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [13s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [145s] OK Running 'BIC.R' [3s] Comparing 'BIC.Rout' to 'BIC.Rout.save' ... OK Running 'ICtab.R' [3s] Comparing 'ICtab.Rout' to 'ICtab.Rout.save' ... OK Running 'RUnit-tests.R' [0s] Running 'binomtest1.R' [5s] Comparing 'binomtest1.Rout' to 'binomtest1.Rout.save' ... OK Running 'boundstest.R' [0s] Running 'controleval.R' [3s] Comparing 'controleval.Rout' to 'controleval.Rout.save' ... OK Running 'eval.R' [3s] Comparing 'eval.Rout' to 'eval.Rout.save' ... OK Running 'formulatest.R' [5s] Comparing 'formulatest.Rout' to 'formulatest.Rout.save' ... OK Running 'glmcomp.R' [5s] Comparing 'glmcomp.Rout' to 'glmcomp.Rout.save' ... OK Running 'gradient_vecpar_profile.R' [16s] Comparing 'gradient_vecpar_profile.Rout' to 'gradient_vecpar_profile.Rout.save' ... OK Running 'grtest1.R' [3s] Comparing 'grtest1.Rout' to 'grtest1.Rout.save' ... OK Running 'impsamp.R' [3s] Running 'methods.R' [3s] Comparing 'methods.Rout' to 'methods.Rout.save' ... OK Running 'mortanal.R' [4s] Comparing 'mortanal.Rout' to 'mortanal.Rout.save' ... OK Running 'optimize.R' [4s] Comparing 'optimize.Rout' to 'optimize.Rout.save' ...46c46 < 2: In regularize.values(x, y, ties, missing(ties)) : --- > 2: In regularize.values(x, y, ties, missing(ties), na.rm = na.rm) : Running 'optimizers.R' [3s] Comparing 'optimizers.Rout' to 'optimizers.Rout.save' ... OK Running 'optimx.R' [11s] Comparing 'optimx.Rout' to 'optimx.Rout.save' ... OK Running 'order.R' [3s] Comparing 'order.Rout' to 'order.Rout.save' ... OK Running 'parscale.R' [3s] Comparing 'parscale.Rout' to 'parscale.Rout.save' ... OK Running 'predict.R' [3s] Comparing 'predict.Rout' to 'predict.Rout.save' ... OK Running 'prof_newmin.R' [3s] Running 'prof_spec.R' [3s] Running 'profbound.R' [4s] Comparing 'profbound.Rout' to 'profbound.Rout.save' ... OK Running 'richards.R' [17s] Comparing 'richards.Rout' to 'richards.Rout.save' ... OK Running 'startvals.R' [3s] Comparing 'startvals.Rout' to 'startvals.Rout.save' ... OK Running 'startvals2.R' [4s] Comparing 'startvals2.Rout' to 'startvals2.Rout.save' ... OK Running 'test-relist1.R' [3s] Comparing 'test-relist1.Rout' to 'test-relist1.Rout.save' ... OK Running 'testbounds.R' [3s] Comparing 'testbounds.Rout' to 'testbounds.Rout.save' ... OK Running 'testderiv.R' [3s] Comparing 'testderiv.Rout' to 'testderiv.Rout.save' ... OK Running 'testenv.R' [4s] Comparing 'testenv.Rout' to 'testenv.Rout.save' ... OK Running 'testparpred.R' [4s] Comparing 'testparpred.Rout' to 'testparpred.Rout.save' ... OK Running 'tmptest.R' [3s] Comparing 'tmptest.Rout' to 'tmptest.Rout.save' ... OK Running 'update.R' [3s] Comparing 'update.Rout' to 'update.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [63s] OK * checking PDF version of manual ... OK * DONE Status: OK