* using log directory 'd:/Rcompile/CRANpkg/local/3.6/clustree.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'clustree/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'clustree' version '0.4.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'clustree' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [38s] ERROR Running 'spelling.R' [1s] Running 'testthat.R' [37s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(clustree) Loading required package: ggraph Loading required package: ggplot2 > > test_check("clustree") == Skipped tests =============================================================== * Seurat cannot be loaded (8) [ FAIL 0 | WARN 1 | SKIP 8 | PASS 85 ] > > proc.time() user system elapsed 33.15 1.43 37.08 runtime error R6031 - Attempt to initialize the CRT more than once. This indicates a bug in your application. * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [66s] WARNING Error(s) in re-building vignettes: --- re-building 'clustree.Rmd' using rmarkdown --- finished re-building 'clustree.Rmd' runtime error R6031 - Attempt to initialize the CRT more than once. This indicates a bug in your application. * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING