* using log directory 'd:/Rcompile/CRANpkg/local/3.6/lucid.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'lucid/DESCRIPTION' ... OK * this is package 'lucid' version '1.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'lucid' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [1s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [5s] ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(lucid) > > test_check("lucid") id P1 P2 P3 1 A a -1 3.3175e-140 2 B b 0 1.0637e-165 3 C c 1 1.1279e-157 id P1 P2 P3 1 A a -1 3.32e-140 2 B b 0 0.00 3 C c 1 0.00 effect variance stddev (Intercept) 615.3 24.81 Residual 16.17 4.021 grp var1 var2 vcov sdcor Rail (Intercept) 615.3 24.81 Residual 16.17 4.021 grp var1 var2 vcov sdcor Rail (Intercept) 1.638 1.28 Residual 11.11 3.333 iteration LogLik wall cpu(sec) restrained 1 -5.78344 16:45:11 0 0 2 1.8756 16:45:11 0 0 3 8.51187 16:45:11 0 0 4 9.74181 16:45:11 0 0 5 9.75215 16:45:11 0 0 6 9.75225 16:45:11 0 0 effect VarComp VarCompSE Zratio Constr Rail.travel-travel 615.3 392.3 1.6 P units.travel-travel 16.17 6.602 2.4 P == Skipped tests =============================================================== * empty test (1) == Failed tests ================================================================ -- Failure (test_vc.R:98:3): mmer ---------------------------------------------- vc(m1s) not equal to structure(...). Component "effect": 'current' is not a factor [ FAIL 1 | WARN 1 | SKIP 1 | PASS 21 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [9s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR