* using log directory 'd:/Rcompile/CRANpkg/local/3.6/pedprobr.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'pedprobr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pedprobr' version '0.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pedprobr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [5s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [7s] ERROR
  Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pedprobr)
  Loading required package: pedtools
  > 
  > test_check("pedprobr")
  == Skipped tests ===============================================================
  * likelihood-list tests need modifications (1)
  
  == Failed tests ================================================================
  -- Failure (test-merlin.R:14:3): MERLIN gives correct likelihood in selfing ped linked markers --
  signif(a, 3) not equal to signif(b, 3).
  1/1 mismatches
  [1] 0 - 0.0156 == -0.0156
  Backtrace:
      x
   1. \-pedprobr:::expect_signif(...) test-merlin.R:14:2
   2.   \-testthat::expect_equal(signif(a, 3), signif(b, 3)) test-merlin.R:7:16
  -- Error (test-merlin.R:19:3): MERLIN gives correct likelihood in selfing ped linked markers --
  Error: Argument `rho` must have length one less than the number of markers
  Backtrace:
      x
   1. +-pedprobr:::expect_signif(...) test-merlin.R:19:2
   2. | \-testthat::expect_equal(signif(a, 3), signif(b, 3)) test-merlin.R:7:16
   3. |   \-testthat::quasi_label(enquo(object), label, arg = "object")
   4. |     \-rlang::eval_bare(expr, quo_get_env(quo))
   5. \-pedprobr:::lm(x, rho = 0)
   6.   \-pedprobr::likelihoodMerlin(..., verbose = verbose) test-merlin.R:4:5
   7.     \-pedprobr:::stop2("Argument `rho` must have length one less than the number of markers")
   8.       \-base::do.call(stop, a)
  
  [ FAIL 2 | WARN 0 | SKIP 1 | PASS 144 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR