* using log directory 'd:/Rcompile/CRANpkg/local/4.0/DemographicTable.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'DemographicTable/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DemographicTable' version '0.1.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DemographicTable' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... WARNING Warning: parse error in file 'lines': 18: unexpected '>' 28: library(officer) 29: x = read_docx() |> ^ * checking examples ... [3s] ERROR Running examples in 'DemographicTable-Ex.R' failed The error most likely occurred in: > ### Name: DemographicTable > ### Title: Create Demographic Table > ### Aliases: DemographicTable > > ### ** Examples > > DemographicTable(esoph) a flextable object. col_keys: `esoph`, `N=88` header has 1 row(s) body has 5 row(s) original dataset sample: esoph 1 ncases.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange 2 ncontrols.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange 3 agegp: n (%).\n\t1\n\t2\n\t3\n\t4\n\t5\n\t6 4 alcgp: n (%).\n\t1\n\t2\n\t3\n\t4 5 tobgp: n (%).\n\t1\n\t2\n\t3\n\t4 N=88 1 \n2.3±2.8\n1.0±4.0\n2.2 \n0.0~17.0 2 \n11.1±12.7\n6.0±11.0\n1.9 \n1.0~60.0 3 \n15 (17.0%)\n15 (17.0%)\n16 (18.2%)\n16 (18.2%)\n15 (17.0%)\n11 (12.5%) 4 \n23 (26.1%)\n23 (26.1%)\n21 (23.9%)\n21 (23.9%) 5 \n24 (27.3%)\n24 (27.3%)\n20 (22.7%)\n20 (22.7%) > DemographicTable(ToothGrowth, groups = 'supp') a flextable object. col_keys: `ToothGrowth`, `N=60`, `supp = OJ N=30 (50.0%)`, `supp = VC N=30 (50.0%)`, `Significance (by supp) ` header has 1 row(s) body has 2 row(s) original dataset sample: ToothGrowth 1 len.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange 2 dose.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange N=60 1 \n18.8±7.6\n19.2±12.2\n-0.1 \n4.2~33.9 2 \n1.2±0.6\n1.0±1.5\n0.4 \n0.5~2.0 supp\n= OJ\nN=30 (50.0%) 1 \n20.7±6.6\n22.7±10.2\n-0.5 \n8.2~30.9 2 \n1.2±0.6\n1.0±1.5\n0.4 \n0.5~2.0 supp\n= VC\nN=30 (50.0%) Significance\n(by supp)\n 1 \n17.0±8.3\n16.5±11.9\n0.3 \n4.2~33.9 0.064\nWilcoxon-\nMann-Whitney 2 \n1.2±0.6\n1.0±1.5\n0.4 \n0.5~2.0 1.000\nWilcoxon-\nMann-Whitney > DemographicTable(ToothGrowth, groups = 'supp', compare = FALSE) a flextable object. col_keys: `ToothGrowth`, `N=60`, `supp = OJ N=30 (50.0%)`, `supp = VC N=30 (50.0%)` header has 1 row(s) body has 2 row(s) original dataset sample: ToothGrowth 1 len.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange 2 dose.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange N=60 1 \n18.8±7.6\n19.2±12.2\n-0.1 \n4.2~33.9 2 \n1.2±0.6\n1.0±1.5\n0.4 \n0.5~2.0 supp\n= OJ\nN=30 (50.0%) 1 \n20.7±6.6\n22.7±10.2\n-0.5 \n8.2~30.9 2 \n1.2±0.6\n1.0±1.5\n0.4 \n0.5~2.0 supp\n= VC\nN=30 (50.0%) 1 \n17.0±8.3\n16.5±11.9\n0.3 \n4.2~33.9 2 \n1.2±0.6\n1.0±1.5\n0.4 \n0.5~2.0 > DemographicTable(warpbreaks, groups = c('wool', 'tension')) a flextable object. col_keys: `warpbreaks`, `N=54`, `wool = A N=27 (50.0%)`, `wool = B N=27 (50.0%)`, `Significance (by wool) `, `tension = L N=18 (33.3%)`, `tension = M N=18 (33.3%)`, `tension = H N=18 (33.3%)`, `Significance (by tension) ` header has 1 row(s) body has 1 row(s) original dataset sample: warpbreaks 1 breaks.\n\tmean±sd\n\tmedian±IQR\n\tSkewness; Shapiro-Wilk\n\tRange N=54 1 \n28.1±13.2\n26.0±15.8\n1.2 \n10.0~70.0 wool\n= A\nN=27 (50.0%) 1 \n31.0±15.9\n26.0±16.5\n1.0 \n10.0~70.0 wool\n= B\nN=27 (50.0%) Significance\n(by wool)\n 1 \n25.3±9.3\n24.0±11.0\n0.6 \n13.0~44.0 0.253\nWilcoxon-\nMann-Whitney tension\n= L\nN=18 (33.3%) 1 \n36.4±16.4\n29.5±23.2\n0.7 \n14.0~70.0 tension\n= M\nN=18 (33.3%) 1 \n26.4±9.1\n27.0±15.5\n0.2 \n12.0~42.0 tension\n= H\nN=18 (33.3%) 1 \n21.7±8.4\n20.5±10.2\n0.9 \n10.0~43.0 Significance\n(by tension)\n 1 0.002 (L vs. H)\n0.115 (M vs. H)\n 0.033 (M vs. L)\nTwo-Sample t > > # write to Word file > library(flextable) > library(officer) > x = read_docx() |> body_add_flextable(value = as_flextable(DemographicTable(esoph))) Error: unexpected '>' in "x = read_docx() |>" Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING