* using log directory 'd:/Rcompile/CRANpkg/local/4.0/clinDataReview.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'clinDataReview/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'clinDataReview' version '1.2.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'clinDataReview' can be installed ... OK * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 4.2Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [17s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [31s] ERROR Running 'testthat.R' [31s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(clinDataReview) > > test_check("clinDataReview") adding: report.html (deflated 63%) adding: report_dependencies101a41381723c/ (stored 0%) adding: report_dependencies101a41381723c/file101a45fe71729.html (deflated 8%) [ FAIL 3 | WARN 1 | SKIP 23 | PASS 424 ] == Skipped tests =============================================================== * On CRAN (23) == Failed tests ================================================================ -- Error (test_render_clinDataReviewReport.R:219:2): The creation of html file from markdown files for specified config files is successful -- Error: Using anchor_sections requires Pandoc 2.0+ Backtrace: x 1. \-clinDataReview::convertMdToHtml(...) at test_render_clinDataReviewReport.R:219:8 2. \-rmarkdown::render(...) 3. \-rmarkdown:::create_output_format(output_format$name, output_format$options) 4. +-base::do.call(output_format_func, options) 5. \-clinDataReview ``() 6. \-bookdown::gitbook(...) 7. \-bookdown::html_document2(...) 8. \-rmarkdown::html_document(...) 9. \-rmarkdown:::add_anchor_sections(anchor_sections, section_divs) -- Error (test_reportingFormats.R:5:2): A gitbook clinical data review format is correctly created -- Error: Using anchor_sections requires Pandoc 2.0+ Backtrace: x 1. \-clinDataReview::gitbook_clinDataReview_report() at test_reportingFormats.R:5:8 2. \-bookdown::gitbook(...) 3. \-bookdown::html_document2(...) 4. \-rmarkdown::html_document(...) 5. \-rmarkdown:::add_anchor_sections(anchor_sections, section_divs) -- Error (test_reportingFormats.R:58:2): A logo is correctly added to a gitbook clinical data review report -- Error: Using anchor_sections requires Pandoc 2.0+ Backtrace: x 1. +-testthat::expect_silent(res <- gitbook_clinDataReview_report(logo = pathPlotBasic)) at test_reportingFormats.R:58:8 2. | \-testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. | +-testthat .capture(...) 4. | | +-withr::with_output_sink(...) 5. | | | \-base::force(code) 6. | | +-base::withCallingHandlers(...) 7. | | \-base::withVisible(code) 8. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. \-clinDataReview::gitbook_clinDataReview_report(logo = pathPlotBasic) 10. \-bookdown::gitbook(...) 11. \-bookdown::html_document2(...) 12. \-rmarkdown::html_document(...) 13. \-rmarkdown:::add_anchor_sections(anchor_sections, section_divs) [ FAIL 3 | WARN 1 | SKIP 23 | PASS 424 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [36s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE