Gene Analysis Toolkit in R

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Documentation for package ‘genekitr’ version 1.0.3

• DESCRIPTION file.

Help Pages

as.enrichdat	Modify dataframe for enrichment plot
biocOrg_name	Datasets geneList entrez gene list with decreasing fold change value
Datasets	Datasets geneList entrez gene list with decreasing fold change value
deg	Datasets geneList entrez gene list with decreasing fold change value
ensOrg_name	Datasets geneList entrez gene list with decreasing fold change value
expoSheet	Export list of datasets into different Excel sheets
geneList	Datasets geneList entrez gene list with decreasing fold change value
genGSEA	Gene Set Enrichment Analysis (FCS method)
genInfo	Get gene related information
genORA	Gene Over-Representation enrichment Analysis (ORA method)
getPubmed	Get pubmed paper records by searching abstract
hsapiens_probe_platform	Datasets geneList entrez gene list with decreasing fold change value
importCP	Import clusterProfiler result
importPanther	Import Panther web result
keggOrg_name	Datasets geneList entrez gene list with decreasing fold change value
msig_category	Datasets geneList entrez gene list with decreasing fold change value
msig_org	Datasets geneList entrez gene list with decreasing fold change value
plotEnrich	Plot for GO and KEGG enrichment analysis
plotEnrichAdv	Advanced Plot for GO and KEGG enrichment analysis Both up and down regulated pathways could be plotted in one figure as two-side barplot
plotGSEA	GSEA plot
plotVenn	Venn plot for groups of genes
plotVolcano	Volcano plot for differential expression analysis
plot_theme	Themes for all plots
simGO	Simplitify GO enrichment result
transId	Transform gene id among symbol, entrezid, ensembl and uniprot.
transProbe	Transform probe id to symbol, entrezid, ensembl or uniprot.