* using log directory 'd:/Rcompile/CRANpkg/local/4.3/ibdreg.Rcheck'
* using R Under development (unstable) (2022-08-11 r82713 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* checking for file 'ibdreg/DESCRIPTION' ... OK
* this is package 'ibdreg' version '0.3.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ibdreg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s] OK
* checking Rd files ... [1s] NOTE
checkRd: (-1) exact.ibd.var.Rd:51: Escaped LaTeX specials: \$
checkRd: (-1) exact.ibd.var.Rd:53: Escaped LaTeX specials: \$
checkRd: (-1) exact.ibd.var.Rd:55: Escaped LaTeX specials: \$
checkRd: (-1) exact.ibd.var.Rd:57: Escaped LaTeX specials: \$
checkRd: (-1) exact.ibd.var.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) ibd.df.merlin.Rd:38: Escaped LaTeX specials: \$
checkRd: (-1) ibd.df.merlin.Rd:40: Escaped LaTeX specials: \$
checkRd: (-1) ibd.df.merlin.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) ibd.df.merlin.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) ibd.df.merlin.Rd:44: Escaped LaTeX specials: \$
checkRd: (-1) ibd.df.merlin.Rd:45: Escaped LaTeX specials: \$
checkRd: (-1) ibdreg.Rd:135: Escaped LaTeX specials: \~
checkRd: (-1) sim.ibd.var.Rd:54: Escaped LaTeX specials: \$
checkRd: (-1) sim.ibd.var.Rd:56: Escaped LaTeX specials: \$
checkRd: (-1) sim.ibd.var.Rd:58: Escaped LaTeX specials: \$
checkRd: (-1) sim.ibd.var.Rd:60: Escaped LaTeX specials: \$
checkRd: (-1) sim.ibd.var.Rd:62: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:28: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:32: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:42: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:133: Escaped LaTeX specials: \$ \$
checkRd: (-1) sim.mark.prop.Rd:135: Escaped LaTeX specials: \$ \$
checkRd: (-1) sim.mark.prop.Rd:157: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:158: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:84: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:86: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:90: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:96: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:100: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:109: Escaped LaTeX specials: \$
checkRd: (-1) sim.mark.prop.Rd:118: Escaped LaTeX specials: \$
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [17s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE