* using log directory 'd:/Rcompile/CRANpkg/local/4.3/modelbased.Rcheck' * using R Under development (unstable) (2022-08-11 r82713 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * checking for file 'modelbased/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'modelbased' version '0.8.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'modelbased' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [12s] ERROR Running examples in 'modelbased-Ex.R' failed The error most likely occurred in: > ### Name: estimate_slopes > ### Title: Estimate Marginal Effects > ### Aliases: estimate_slopes > > ### ** Examples > > if (require("emmeans")) { + # Get an idea of the data + if (require("ggplot2")) { + ggplot(iris, aes(x = Petal.Length, y = Sepal.Width)) + + geom_point(aes(color = Species)) + + geom_smooth(color = "black", se = FALSE) + + geom_smooth(aes(color = Species), linetype = "dotted", se = FALSE) + + geom_smooth(aes(color = Species), method = "lm", se = FALSE) + } + + # Model it + model <- lm(Sepal.Width ~ Species * Petal.Length, data = iris) + # Compute the marginal effect of Petal.Length at each level of Species + slopes <- estimate_slopes(model, trend = "Petal.Length", at = "Species") + slopes + if (require("see")) { + plot(slopes) + } + standardize(slopes) + + if (require("mgcv") && require("see")) { + model <- mgcv::gam(Sepal.Width ~ s(Petal.Length), data = iris) + slopes <- estimate_slopes(model, at = "Petal.Length", length = 50) + summary(slopes) + plot(slopes) + + model <- mgcv::gam(Sepal.Width ~ s(Petal.Length, by = Species), data = iris) + slopes <- estimate_slopes(model, + trend = "Petal.Length", + at = c("Petal.Length", "Species"), length = 20 + ) + summary(slopes) + plot(slopes) + } + } Loading required package: emmeans Loading required package: ggplot2 Loading required package: see Loading required package: mgcv Loading required package: nlme This is mgcv 1.8-40. For overview type 'help("mgcv-package")'. No numeric variable was specified for slope estimation. Selecting `trend = "Petal.Length"`. Error in emmeans::emtrends(model, specs = args$emmeans_specs, var = args$trend, : Variable 'Petal.Length' is not in the dataset Calls: estimate_slopes -> get_emtrends -> Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [45s] OK Running 'spelling.R' [0s] Running 'testthat.R' [44s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [4s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR