* using log directory 'd:/Rcompile/CRANpkg/local/4.1/pspatreg.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'pspatreg/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pspatreg' version '1.0.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pspatreg' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [54s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [24s] ERROR Running examples in 'pspatreg-Ex.R' failed The error most likely occurred in: > ### Name: impactsnopar > ### Title: Compute direct, indirect and total impacts functions for > ### continous non-parametric covariates in semiparametric spatial > ### regression models. > ### Aliases: impactsnopar > > ### ** Examples > > ################################################ > # Examples using spatial data of Ames Houses. > ############################################### > # Getting and preparing the data > library(pspatreg) > library(spdep) Loading required package: sp Loading required package: spData To access larger datasets in this package, install the spDataLarge package with: `install.packages('spDataLarge', repos='https://nowosad.github.io/drat/', type='source')` Loading required package: sf Linking to GEOS 3.10.2, GDAL 3.4.1, PROJ 7.2.1; sf_use_s2() is TRUE > library(sf) > ames <- AmesHousing::make_ames() # Raw Ames Housing Data > ames_sf <- st_as_sf(ames, coords = c("Longitude", "Latitude")) > ames_sf$Longitude <- ames$Longitude > ames_sf$Latitude <- ames$Latitude > ames_sf$lnSale_Price <- log(ames_sf$Sale_Price) > ames_sf$lnLot_Area <- log(ames_sf$Lot_Area) > ames_sf$lnTotal_Bsmt_SF <- log(ames_sf$Total_Bsmt_SF+1) > ames_sf$lnGr_Liv_Area <- log(ames_sf$Gr_Liv_Area) > ########### Constructing the spatial weights matrix > ames_sf1 <- ames_sf[(duplicated(ames_sf$Longitude) == FALSE), ] > coord_sf1 <- cbind(ames_sf1$Longitude, ames_sf1$Latitude) > ID <- row.names(as(ames_sf1, "sf")) > col_tri_nb <- tri2nb(coord_sf1) > soi_nb <- graph2nb(soi.graph(col_tri_nb, + coord_sf1), + row.names = ID) Error in soi.graph(col_tri_nb, coord_sf1) : dbscan required Calls: graph2nb -> soi.graph Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [9s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR