3D Volcano Plots and Polar Plots for Three-Class Data


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Documentation for package ‘volcano3D’ version 2.0.0

Help Pages

add_animation Add mode bar button to rotate the plot
boxplot_trio Boxplot to compare groups
calc_pvals Calculate one-way test and pairwise tests
deseq_polar Convert DESeq2 objects to a volcano3d object
grid-class An S4 class to define the polar grid coordinates system.
polar_coords Coordinates for Three Way Polar Plot
polar_grid Grid required for 3D volcano plot and 2D radial plots
radial_ggplot 'Ggplot' for Three Way Polar Plot
radial_plotly Three-way radial comparison Polar Plot (using plotly)
show_grid Plots grid objects for inspection using plotly
significance_subset Extract a subset population
syn_example_meta PEAC synovial sample data
syn_example_rld PEAC synovial gene expression data
volcano3D Three-Dimensional Volcano Plot
voom_polar Convert RNA-Seq count data to a volcano3d object using 'limma voom'