* using log directory 'd:/Rcompile/CRANpkg/local/4.2/factorMerger.Rcheck' * using R version 4.2.1 (2022-06-23 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * checking for file 'factorMerger/DESCRIPTION' ... OK * this is package 'factorMerger' version '0.4.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'factorMerger' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [12s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [12s] OK Running 'testthat.R' [12s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [49s] ERROR Error(s) in re-building vignettes: --- re-building 'brca.Rmd' using rmarkdown Welcome to factorMerger 0.4.0! Loading required package: forcats Warning: `arrange_()` was deprecated in dplyr 0.7.0. Please use `arrange()` instead. See vignette('programming') for more help This warning is displayed once every 8 hours. Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated. Quitting from lines 51-56 (brca.Rmd) Error: processing vignette 'brca.Rmd' failed with diagnostics: 'list' object cannot be coerced to type 'double' --- failed re-building 'brca.Rmd' --- re-building 'factorMerger.Rmd' using rmarkdown Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Warning: `select_()` was deprecated in dplyr 0.7.0. Please use `select()` instead. This warning is displayed once every 8 hours. Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: `group_by_()` was deprecated in dplyr 0.7.0. Please use `group_by()` instead. See vignette('programming') for more help This warning is displayed once every 8 hours. Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. Warning in data(veteran) : data set 'veteran' not found Quitting from lines 213-220 (factorMerger.Rmd) Error: processing vignette 'factorMerger.Rmd' failed with diagnostics: 'list' object cannot be coerced to type 'double' --- failed re-building 'factorMerger.Rmd' --- re-building 'pisa2012.Rmd' using rmarkdown Using country as id variables Warning: Vectorized input to `element_text()` is not officially supported. Results may be unexpected or may change in future versions of ggplot2. --- finished re-building 'pisa2012.Rmd' SUMMARY: processing the following files failed: 'brca.Rmd' 'factorMerger.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR