CRAN Package Check Results for Maintainer ‘Daniel P. Smith <dansmith at orst.edu>’

Last updated on 2022-08-15 08:50:21 CEST.

Package	FAIL	NOTE	OK
rbiom	2	1	10

Package rbiom

Current CRAN status: FAIL: 2, NOTE: 1, OK: 10

Version: 1.0.3
Check: examples
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
    >
    > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    > biom <- read.biom(infile)
    > range(slam::col_sums(biom$counts))
    [1] 182 22117
    >
    > biom <- rarefy(biom, depth=1000)
    > range(slam::col_sums(biom$counts))
    [1] 1000 1000
    >
    >
    >
    >
    > cleanEx()
    > nameEx("read.biom")
    > ### * read.biom
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: read.biom
    > ### Title: Extracts counts, metadata, taxonomy, and phylogeny from a biom
    > ### file.
    > ### Aliases: read.biom
    >
    > ### ** Examples
    >
    > library(rbiom)
    >
    > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    > biom <- read.biom(infile)
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘rhdf5’
Flavor: r-release-macos-arm64