CRAN Package Check Results for Maintainer ‘Edzer Pebesma <edzer.pebesma at uni-muenster.de>’

Last updated on 2022-08-15 08:50:22 CEST.

Package ERROR NOTE OK
gstat 5 8
hexbin 7 6
intervals 5 8
lwgeom 7 6
s2 8 5
sf 2 6 5
sp 13
spacetime 1 12
stars 4 9
trajectories 13
units 13
vardiag 13

Package gstat

Current CRAN status: NOTE: 5, OK: 8

Version: 2.0-9
Check: Rd files
Result: NOTE
    checkRd: (-1) fit.variogram.Rd:91: Escaped LaTeX specials: \&
    checkRd: (-1) fit.variogram.gls.Rd:39: Escaped LaTeX specials: \&
    checkRd: (-1) gstat.Rd:117: Escaped LaTeX specials: \&
    checkRd: (-1) hscat.Rd:40: Escaped LaTeX specials: \&
    checkRd: (-1) krige.Rd:163: Escaped LaTeX specials: \&
    checkRd: (-1) krigeST.Rd:85: Escaped LaTeX specials: \&
    checkRd: (-1) meuse.all.Rd:41: Escaped LaTeX specials: \&
    checkRd: (-1) predict.gstat.Rd:155: Escaped LaTeX specials: \&
    checkRd: (-1) variogram.Rd:163: Escaped LaTeX specials: \&
    checkRd: (-1) variogramST.Rd:61: Escaped LaTeX specials: \&
    checkRd: (-1) vgm.Rd:116: Escaped LaTeX specials: \&
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package hexbin

Current CRAN status: NOTE: 7, OK: 6

Version: 1.28.2
Check: Rd files
Result: NOTE
    checkRd: (-1) erode.hexbin.Rd:43: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 1.28.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'marray', 'affy', 'Biobase', 'limma'
Flavor: r-release-macos-arm64

Version: 1.28.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘limma’
Flavor: r-release-macos-arm64

Version: 1.28.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘marray’
Flavor: r-oldrel-macos-arm64

Package intervals

Current CRAN status: NOTE: 5, OK: 8

Version: 0.15.2
Check: Rd files
Result: NOTE
    checkRd: (-1) Intervals-class.Rd:109: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals-class.Rd:110: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:68: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:76: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:77: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:78: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:79: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:81: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:88: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:89: Escaped LaTeX specials: \_
    checkRd: (-1) Intervals_virtual-class.Rd:90: Escaped LaTeX specials: \_
    checkRd: (-1) sgd.Rd:12: Escaped LaTeX specials: \_
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package lwgeom

Current CRAN status: NOTE: 7, OK: 6

Version: 0.2-8
Check: installed package size
Result: NOTE
     installed size is 11.4Mb
     sub-directories of 1Mb or more:
     libs 11.3Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package s2

Current CRAN status: NOTE: 8, OK: 5

Version: 1.1.0
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘sf’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: installed package size
Result: NOTE
     installed size is 6.5Mb
     sub-directories of 1Mb or more:
     libs 5.4Mb
Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package sf

Current CRAN status: ERROR: 2, NOTE: 6, OK: 5

Version: 1.0-8
Check: installed package size
Result: NOTE
     installed size is 7.4Mb
     sub-directories of 1Mb or more:
     doc 1.7Mb
     libs 1.0Mb
     sqlite 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-ix86+x86_64

Version: 1.0-8
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Package sp

Current CRAN status: OK: 13

Package spacetime

Current CRAN status: NOTE: 1, OK: 12

Version: 1.2-8
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘sftime’
Flavor: r-release-macos-arm64

Package stars

Current CRAN status: ERROR: 4, NOTE: 9

Additional issues

M1mac

Version: 0.5-6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'starsdata'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-ix86+x86_64

Version: 0.5-6
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     doc 1.7Mb
     nc 1.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-ix86+x86_64

Version: 0.5-6
Check: examples
Result: ERROR
    Running examples in ‘stars-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: st_warp
    > ### Title: Warp (resample) grids in stars objects to a new grid, possibly
    > ### in an new coordinate reference system
    > ### Aliases: st_warp
    >
    > ### ** Examples
    >
    > geomatrix = system.file("tif/geomatrix.tif", package = "stars")
    > (x = read_stars(geomatrix))
    stars object with 2 dimensions and 1 attribute
    attribute(s):
     Min. 1st Qu. Median Mean 3rd Qu. Max.
    geomatrix.tif 74 107 123 126.765 132 255
    dimension(s):
     from to offset delta refsys point values x/y
    x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE NULL [x]
    y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE NULL [y]
    sheared raster with parameters: -5 -5
    > new_crs = st_crs(4326)
    > y = st_warp(x, crs = new_crs)
    > plot(st_transform(st_as_sfc(st_bbox(x)), new_crs), col = NA, border = 'red')
    > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE)
    > image(y, add = TRUE, nbreaks = 6)
    > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE)
    > plot(st_transform(st_as_sfc(x, as_points=FALSE), new_crs), add = TRUE)
    > # warp 0-360 raster to -180-180 raster:
    > r = read_stars(system.file("nc/reduced.nc", package = "stars"))
    trying to read file: /Volumes/Builds/packages/big-sur-arm64/results/4.2/stars.Rcheck/stars/nc/reduced.nc
    Error in CPL_read_gdal(as.character(x), as.character(options), as.character(driver), :
     file not found
    Calls: read_stars ... is_big -> read_stars -> <Anonymous> -> CPL_read_gdal
    Execution halted
Flavor: r-release-macos-arm64

Version: 0.5-6
Check: tests
Result: ERROR
     Running ‘aggregate.R’ [1s/2s]
     Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ...4c4
    < Linking to GEOS 3.10.2, GDAL 3.4.2, PROJ 8.2.1; sf_use_s2() is TRUE
    ---
    > Linking to GEOS 3.10.2, GDAL 3.4.3, PROJ 8.2.0; sf_use_s2() is TRUE
     Running ‘align.R’ [1s/2s]
     Comparing ‘align.Rout’ to ‘align.Rout.save’ ... OK
     Running ‘area.R’ [1s/1s]
     Comparing ‘area.Rout’ to ‘area.Rout.save’ ... OK
     Running ‘crop.R’ [2s/2s]
     Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
     Running ‘curvilinear.R’ [1s/1s]
     Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ... OK
     Running ‘datasets.R’ [1s/1s]
     Comparing ‘datasets.Rout’ to ‘datasets.Rout.save’ ... OK
     Running ‘dimensions.R’ [1s/1s]
    Running the tests in ‘tests/dimensions.R’ failed.
    Complete output:
     > # https://github.com/r-spatial/stars/issues/295
     > suppressPackageStartupMessages(library(stars))
     > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars"))
     trying to read file: /Volumes/Builds/packages/big-sur-arm64/results/4.2/stars.Rcheck/stars/nc/bcsd_obs_1999.nc
     Error in CPL_read_gdal(as.character(x), as.character(options), as.character(driver), :
     file not found
     Calls: read_stars ... is_big -> read_stars -> <Anonymous> -> CPL_read_gdal
     Execution halted
Flavor: r-release-macos-arm64

Version: 0.5-6
Check: package dependencies
Result: ERROR
    Package required and available but unsuitable version: ‘sf’
    
    Package suggested but not available for checking: ‘starsdata’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.5-6
Check: examples
Result: ERROR
    Running examples in ‘stars-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: st_warp
    > ### Title: Warp (resample) grids in stars objects to a new grid, possibly
    > ### in an new coordinate reference system
    > ### Aliases: st_warp
    >
    > ### ** Examples
    >
    > geomatrix = system.file("tif/geomatrix.tif", package = "stars")
    > (x = read_stars(geomatrix))
    stars object with 2 dimensions and 1 attribute
    attribute(s):
     Min. 1st Qu. Median Mean 3rd Qu. Max.
    geomatrix.tif 74 107 123 126.765 132 255
    dimension(s):
     from to offset delta refsys point values x/y
    x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE NULL [x]
    y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE NULL [y]
    sheared raster with parameters: -5 -5
    > new_crs = st_crs(4326)
    > y = st_warp(x, crs = new_crs)
    > plot(st_transform(st_as_sfc(st_bbox(x)), new_crs), col = NA, border = 'red')
    > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE)
    > image(y, add = TRUE, nbreaks = 6)
    > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE)
    > plot(st_transform(st_as_sfc(x, as_points=FALSE), new_crs), add = TRUE)
    > # warp 0-360 raster to -180-180 raster:
    > r = read_stars(system.file("nc/reduced.nc", package = "stars"))
    trying to read file: /Volumes/Builds/packages/big-sur-arm64/results/4.1/stars.Rcheck/stars/nc/reduced.nc
    Error in CPL_read_gdal(as.character(x), as.character(options), as.character(driver), :
     file not found
    Calls: read_stars ... is_big -> read_stars -> <Anonymous> -> CPL_read_gdal
    Execution halted
Flavor: r-oldrel-macos-arm64

Version: 0.5-6
Check: tests
Result: ERROR
     Running ‘aggregate.R’ [1s/1s]
     Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ...4c4
    < Linking to GEOS 3.10.2, GDAL 3.4.2, PROJ 8.2.1; sf_use_s2() is TRUE
    ---
    > Linking to GEOS 3.10.2, GDAL 3.4.3, PROJ 8.2.0; sf_use_s2() is TRUE
     Running ‘align.R’ [1s/1s]
     Comparing ‘align.Rout’ to ‘align.Rout.save’ ... OK
     Running ‘area.R’ [1s/1s]
     Comparing ‘area.Rout’ to ‘area.Rout.save’ ... OK
     Running ‘crop.R’ [1s/1s]
     Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
     Running ‘curvilinear.R’ [0s/0s]
     Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ... OK
     Running ‘datasets.R’ [1s/1s]
     Comparing ‘datasets.Rout’ to ‘datasets.Rout.save’ ... OK
     Running ‘dimensions.R’ [0s/0s]
    Running the tests in ‘tests/dimensions.R’ failed.
    Complete output:
     > # https://github.com/r-spatial/stars/issues/295
     > suppressPackageStartupMessages(library(stars))
     > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars"))
     trying to read file: /Volumes/Builds/packages/big-sur-arm64/results/4.1/stars.Rcheck/stars/nc/bcsd_obs_1999.nc
     Error in CPL_read_gdal(as.character(x), as.character(options), as.character(driver), :
     file not found
     Calls: read_stars ... is_big -> read_stars -> <Anonymous> -> CPL_read_gdal
     Execution halted
Flavor: r-oldrel-macos-arm64

Package trajectories

Current CRAN status: NOTE: 13

Version: 0.2-3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'taxidata'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package units

Current CRAN status: OK: 13

Package vardiag

Current CRAN status: OK: 13