Last updated on 2022-08-15 08:50:22 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| simPATHy | 3 | 2 | 8 |
| SourceSet | 1 | 12 |
Current CRAN status: ERROR: 3, NOTE: 2, OK: 8
Version: 0.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘clipper’
Flavors: r-devel-linux-x86_64-fedora-clang, r-oldrel-macos-arm64
Version: 0.6
Check: package dependencies
Result: ERROR
Package required but not available: ‘qpgraph’
Packages suggested but not available for checking: 'clipper', 'topologyGSA'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 12
Version: 0.1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'r2cytoscape'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'r2cytoscape', 'hgu95av2.db'
Flavor: r-release-macos-arm64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘SourceSet.Rmd’ using rmarkdown
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Identifing all possible orderings..
Total run time: 0.53 secs
Identifing all possible orderings..
Total run time: 0.34 secs
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Quitting from lines 419-429 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
there is no package called 'hgu95av2.db'
--- failed re-building ‘SourceSet.Rmd’
SUMMARY: processing the following file failed:
‘SourceSet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64