Last updated on 2022-08-15 08:50:24 CEST.
| Package | FAIL | WARN | NOTE | OK |
|---|---|---|---|---|
| ACNE | 13 | |||
| aroma.affymetrix | 8 | 5 | ||
| aroma.apd | 1 | 12 | ||
| aroma.cn | 1 | 12 | ||
| aroma.core | 13 | |||
| calmate | 13 | |||
| dChipIO | 13 | |||
| doFuture | 13 | |||
| future | 4 | 9 | ||
| future.apply | 4 | 9 | ||
| future.batchtools | 1 | 12 | ||
| future.callr | 13 | |||
| future.tests | 13 | |||
| globals | 13 | |||
| listenv | 13 | |||
| matrixStats | 13 | |||
| parallelly | 13 | |||
| profmem | 13 | |||
| progressr | 4 | 9 | ||
| PSCBS | 13 | |||
| R.cache | 13 | |||
| R.devices | 1 | 12 | ||
| R.filesets | 13 | |||
| R.huge | 13 | |||
| R.matlab | 2 | 6 | 5 | |
| R.methodsS3 | 13 | |||
| R.oo | 13 | |||
| R.rsp | 1 | 12 | ||
| R.utils | 1 | 12 | ||
| startup | 13 | |||
| TopDom | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 3.2.1
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
R 2.3Mb
help 1.1Mb
testScripts 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.2.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
'AffymetrixDataTestFiles'
Flavor: r-release-macos-arm64
Version: 3.2.1
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
Flavor: r-release-macos-arm64
Current CRAN status: NOTE: 1, OK: 12
Version: 0.6.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘affxparser’
Flavor: r-release-macos-arm64
Version: 0.6.1
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘affxparser’
Flavor: r-release-macos-arm64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GLAD’
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 13
Version: 3.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 3.2.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GLAD’
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 1.27.0
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
future.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
future.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
multiprocess.html:28:1: Warning: nested emphasis <em>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.27.0
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
future.html:23:4: Warning: <img> attribute "align" not allowed for HTML5
multiprocess.html:28:1: Warning: nested emphasis <em>
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 4, OK: 9
Version: 1.9.0
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
future.apply.html:77:104: Warning: inserting implicit <p>
future.apply.html:80:43: Warning: inserting implicit <p>
future.apply.html:84:48: Warning: inserting implicit <p>
future.apply.html:89:58: Warning: inserting implicit <p>
future.apply.html:95:94: Warning: inserting implicit <p>
future.apply.html:99:79: Warning: inserting implicit <p>
future.apply.html:77:104: Warning: trimming empty <p>
future.apply.html:80:43: Warning: trimming empty <p>
future.apply.html:84:48: Warning: trimming empty <p>
future.apply.html:89:58: Warning: trimming empty <p>
future.apply.html:95:94: Warning: trimming empty <p>
future.apply.html:99:79: Warning: trimming empty <p>
future_lapply.html:303:105: Warning: inserting implicit <p>
future_lapply.html:303:105: Warning: trimming empty <p>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 1, OK: 12
Version: 0.10.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘globals’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 4, OK: 9
Version: 0.10.1
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
handlers.html:80:4: Warning: nested emphasis <em>
with_progress.html:102:4: Warning: nested emphasis <em>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: WARN: 1, OK: 12
Version: 2.17.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'R.devices-overview.tex.rsp' using rsp
R.devices v2.17.1 (2022-06-21 08:00:02 UTC) successfully loaded. See ?R.devices for help.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "R.devices-overview.tex" --max-iterations=20 -I "d:/RCompile/CRANpkg/local/4.1/R.devices.Rcheck/vign_test/R.devices/vignettes" -I "D:/RCompile/recent/R-4.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-4.1.3/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'R.devices-overview.tex.rsp' failed with diagnostics:
running 'texi2dvi' on 'R.devices-overview.tex' failed
LaTeX errors:
devices-overview.tex:55: LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help
You're in trouble here. Try typing <return> to proceed.
--- failed re-building 'R.devices-overview.tex.rsp'
SUMMARY: processing the following file failed:
'R.devices-overview.tex.rsp'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: FAIL: 2, NOTE: 6, OK: 5
Version: 3.6.2
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
1._The_MATLAB_server_running_in_MATLAB.html:482:8: Warning: trimming empty <p>
1._The_MATLAB_server_running_in_MATLAB.html:563:8: Warning: trimming empty <p>
R.matlab-package.html:103:1: Warning: trimming empty <p>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 3.6.2
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
Warning: R.methodsS3::throw() is deprecated. Use base::stop() instead, or R.oo::throw().
ERROR: Detected objects with duplicated names (A). Only the last occurance of each duplicated object will be available in MATLAB if completed: writeMat.default(filename, A = A, B = B, A = C)
>
>
> ## Not run:
> ##D # When writing to a stream connection the receiver needs to know on
> ##D # beforehand how many bytes are available. This can be done by using
> ##D # the 'onWrite' argument.
> ##D onWrite <- function(x)
> ##D writeBin(x$length, con = x$con, size = 4, endian = "little")
> ##D writeMat(con, A = A, B = B, onWrite = onWrite)
> ## End(Not run)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 141.95 489.75 636.42 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 3.6.2
Check: HTML version of manual
Result: NOTE
Found the following problems:
1._The_MATLAB_server_running_in_MATLAB.Rd:482:8: Warning: trimming empty <p>
1._The_MATLAB_server_running_in_MATLAB.Rd:563:8: Warning: trimming empty <p>
R.matlab-package.Rd:103:1: Warning: trimming empty <p>
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 3.6.2
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
Warning: R.methodsS3::throw() is deprecated. Use base::stop() instead, or R.oo::throw().
ERROR: Detected objects with duplicated names (A). Only the last occurance of each duplicated object will be available in MATLAB if completed: writeMat.default(filename, A = A, B = B, A = C)
>
>
> ## Not run:
> ##D # When writing to a stream connection the receiver needs to know on
> ##D # beforehand how many bytes are available. This can be done by using
> ##D # the 'onWrite' argument.
> ##D onWrite <- function(x)
> ##D writeBin(x$length, con = x$con, size = 4, endian = "little")
> ##D writeMat(con, A = A, B = B, onWrite = onWrite)
> ## End(Not run)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 175.57 522.9 702.36 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: WARN: 1, OK: 12
Version: 0.45.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'R_packages-Static_PDF_and_HTML_vignettes.pdf.asis' using asis
--- finished re-building 'R_packages-Static_PDF_and_HTML_vignettes.pdf.asis'
--- re-building 'R_packages-LaTeX_vignettes.ltx' using tex
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "R_packages-LaTeX_vignettes.ltx" --max-iterations=20 -I "D:/RCompile/recent/R-4.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-4.1.3/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'R_packages-LaTeX_vignettes.ltx' failed with diagnostics:
running 'texi2dvi' on 'R_packages-LaTeX_vignettes.ltx' failed
LaTeX errors:
-LaTeX_vignettes.ltx:21: LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help
You're in trouble here. Try typing <return> to proceed.
--- failed re-building 'R_packages-LaTeX_vignettes.ltx'
--- re-building 'Dynamic_document_creation_using_RSP.tex.rsp' using rsp
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "Dynamic_document_creation_using_RSP.tex" --max-iterations=20 -I "d:/RCompile/CRANpkg/local/4.1/R.rsp.Rcheck/vign_test/R.rsp/vignettes" -I "D:/RCompile/recent/R-4.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-4.1.3/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Dynamic_document_creation_using_RSP.tex.rsp' failed with diagnostics:
running 'texi2dvi' on 'Dynamic_document_creation_using_RSP.tex' failed
LaTeX errors:
cument_creation_using_RSP.tex:20: LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help
You're in trouble here. Try typing <return> to proceed.
--- failed re-building 'Dynamic_document_creation_using_RSP.tex.rsp'
--- re-building 'RSP_intro.html.rsp' using rsp
--- finished re-building 'RSP_intro.html.rsp'
--- re-building 'RSP_refcard.tex.rsp' using rsp
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "RSP_refcard.tex" --max-iterations=20 -I "d:/RCompile/CRANpkg/local/4.1/R.rsp.Rcheck/vign_test/R.rsp/vignettes" -I "D:/RCompile/recent/R-4.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-4.1.3/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'RSP_refcard.tex.rsp' failed with diagnostics:
running 'texi2dvi' on 'RSP_refcard.tex' failed
LaTeX errors:
d.tex:19: LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help
You're in trouble here. Try typing <return> to proceed.
--- failed re-building 'RSP_refcard.tex.rsp'
--- re-building 'R_packages-RSP_vignettes.md.rsp' using rsp
--- finished re-building 'R_packages-RSP_vignettes.md.rsp'
--- re-building 'R_packages-Vignettes_prior_to_R300.tex.rsp' using rsp
Warning in file(con, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
Warning in file(con, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
Warning in file(con, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", :
running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "R_packages-Vignettes_prior_to_R300.tex" --max-iterations=20 -I "d:/RCompile/CRANpkg/local/4.1/R.rsp.Rcheck/vign_test/R.rsp/vignettes" -I "D:/RCompile/recent/R-4.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-4.1.3/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'R_packages-Vignettes_prior_to_R300.tex.rsp' failed with diagnostics:
running 'texi2dvi' on 'R_packages-Vignettes_prior_to_R300.tex' failed
LaTeX errors:
-Vignettes_prior_to_R300.tex:16: LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help
You're in trouble here. Try typing <return> to proceed.
--- failed re-building 'R_packages-Vignettes_prior_to_R300.tex.rsp'
SUMMARY: processing the following files failed:
'R_packages-LaTeX_vignettes.ltx'
'Dynamic_document_creation_using_RSP.tex.rsp' 'RSP_refcard.tex.rsp'
'R_packages-Vignettes_prior_to_R300.tex.rsp'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: FAIL: 1, OK: 12
Version: 2.12.0
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> nameEx("writeBinFragments")
> ### * writeBinFragments
>
> flush(stderr()); flush(stdout())
>
> ### Name: writeBinFragments
> ### Title: Writes binary data to disjoint sections of a connection or a
> ### file
> ### Aliases: writeBinFragments.default writeBinFragments
> ### Keywords: IO
>
> ### ** Examples
> ## Not run: # See example(readBinFragments.connection)
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 244.61 788.28 1045.31 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13