Last updated on 2022-08-15 08:50:28 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| clinDataReview | 1 | 7 | 5 |
| clinUtils | 11 | 2 | |
| inTextSummaryTable | 8 | 5 | |
| mpm | 13 | ||
| nlcv | 1 | 12 | |
| patientProfilesVis | 8 | 5 |
Current CRAN status: ERROR: 1, NOTE: 7, OK: 5
Version: 1.2.2
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 4.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running 'testthat.R' [31s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 64%)
adding: report_dependencies7a6c2aa76c88/ (stored 0%)
adding: report_dependencies7a6c2aa76c88/file7a6c37b0619b.html (deflated 8%)
[ FAIL 3 | WARN 1 | SKIP 23 | PASS 424 ]
== Skipped tests ===============================================================
* On CRAN (23)
== Failed tests ================================================================
-- Error (test_render_clinDataReviewReport.R:219:2): The creation of html file from markdown files for specified config files is successful --
Error: Using anchor_sections requires Pandoc 2.0+
Backtrace:
x
1. \-clinDataReview::convertMdToHtml(...) at test_render_clinDataReviewReport.R:219:8
2. \-rmarkdown::render(...)
3. \-rmarkdown:::create_output_format(output_format$name, output_format$options)
4. +-base::do.call(output_format_func, options)
5. \-clinDataReview (local) `<fn>`()
6. \-bookdown::gitbook(...)
7. \-bookdown::html_document2(...)
8. \-rmarkdown::html_document(...)
9. \-rmarkdown:::add_anchor_sections(anchor_sections, section_divs)
-- Error (test_reportingFormats.R:5:2): A gitbook clinical data review format is correctly created --
Error: Using anchor_sections requires Pandoc 2.0+
Backtrace:
x
1. \-clinDataReview::gitbook_clinDataReview_report() at test_reportingFormats.R:5:8
2. \-bookdown::gitbook(...)
3. \-bookdown::html_document2(...)
4. \-rmarkdown::html_document(...)
5. \-rmarkdown:::add_anchor_sections(anchor_sections, section_divs)
-- Error (test_reportingFormats.R:58:2): A logo is correctly added to a gitbook clinical data review report --
Error: Using anchor_sections requires Pandoc 2.0+
Backtrace:
x
1. +-testthat::expect_silent(res <- gitbook_clinDataReview_report(logo = pathPlotBasic)) at test_reportingFormats.R:58:8
2. | \-testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. | +-testthat (local) .capture(...)
4. | | +-withr::with_output_sink(...)
5. | | | \-base::force(code)
6. | | +-base::withCallingHandlers(...)
7. | | \-base::withVisible(code)
8. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. \-clinDataReview::gitbook_clinDataReview_report(logo = pathPlotBasic)
10. \-bookdown::gitbook(...)
11. \-bookdown::html_document2(...)
12. \-rmarkdown::html_document(...)
13. \-rmarkdown:::add_anchor_sections(anchor_sections, section_divs)
[ FAIL 3 | WARN 1 | SKIP 23 | PASS 424 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 11, OK: 2
Version: 0.1.1
Check: Rd files
Result: NOTE
checkRd: (-1) dataADaMCDISCP01.Rd:48: Escaped LaTeX specials: \&
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.1
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
doc 5.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 8, OK: 5
Version: 3.1.1
Check: installed package size
Result: NOTE
installed size is 10.2Mb
sub-directories of 1Mb or more:
doc 9.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.1.1
Check: Rd cross-references
Result: NOTE
Undeclared package ‘DT’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 0.3.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ALL’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 8, OK: 5
Version: 2.0.2
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
doc 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64