CRAN Package Check Results for Maintainer ‘Tom August <tomaug at ceh.ac.uk>’

Last updated on 2022-08-15 08:50:35 CEST.

Package ERROR NOTE OK
rYoutheria 13
zoon 1 12

Package rYoutheria

Current CRAN status: OK: 13

Package zoon

Current CRAN status: ERROR: 1, NOTE: 12

Version: 0.6.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'SDMTools'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.6.5
Check: examples
Result: ERROR
    Running examples in 'zoon-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: ModuleArguments
    > ### Title: ModuleArguments
    > ### Aliases: ModuleArguments
    >
    > ### ** Examples
    >
    > ModuleArguments('Background')
    Error in ModuleArguments("Background") :
     URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/Background.R
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.6.5
Check: tests
Result: ERROR
     Running 'test-all.R' [31s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > test_check("zoon")
     Loading required package: zoon
     Loading required package: raster
     Loading required package: sp
     [ FAIL 15 | WARN 5 | SKIP 31 | PASS 122 ]
    
     == Skipped tests ===============================================================
     * On CRAN (31)
    
     == Failed tests ================================================================
     -- Error (testCombineRasters.R:94:3): Test in workflows ------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-zoon::workflow(...) at testCombineRasters.R:94:2
     2. | \-zoon:::LapplyGetModule(...)
     3. | \-base::lapply(...)
     4. | \-zoon (local) FUN(X[[i]], ...)
     5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     8. \-RCurl (local) `<fn>`(...)
     -- Error (testGetModule.R:23:3): GetModule works -------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-testthat::expect_that(...) at testGetModule.R:23:2
     2. | \-testthat (local) condition(object)
     3. | \-testthat::expect_equal(x, expected, ..., expected.label = label)
     4. | \-testthat::quasi_label(enquo(object), label, arg = "object")
     5. | \-rlang::eval_bare(expr, quo_get_env(quo))
     6. +-zoon:::GetModule("NoProcess", FALSE)
     7. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     8. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     9. \-RCurl (local) `<fn>`(...)
     -- Error (testLapplyGetModule.R:7:3): LapplyGetModule works correctly ----------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-zoon:::LapplyGetModule(list(a, b), forceReproducible = FALSE) at testLapplyGetModule.R:7:2
     2. | \-base::lapply(...)
     3. | \-zoon (local) FUN(X[[i]], ...)
     4. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     5. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     6. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     7. \-RCurl (local) `<fn>`(...)
     -- Error (testLoadModule.R:33:3): LoadModule works -----------------------------
     Error in `LoadModule("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
     Backtrace:
     x
     1. +-testthat::expect_that(LoadModule("NoProcess"), equals("NoProcess")) at testLoadModule.R:33:2
     2. | \-testthat (local) condition(object)
     3. | \-testthat::expect_equal(x, expected, ..., expected.label = label)
     4. | \-testthat::quasi_label(enquo(object), label, arg = "object")
     5. | \-rlang::eval_bare(expr, quo_get_env(quo))
     6. \-zoon::LoadModule("NoProcess")
     -- Error (testModuleArguments.R:14:3): Check returns list with all the names ---
     Error in `ModuleArguments("Background")`: URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/Background.R
     Backtrace:
     x
     1. \-zoon::ModuleArguments("Background") at testModuleArguments.R:14:2
     -- Error (testModuleHelp.R:24:3): Help as text ---------------------------------
     Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
     Backtrace:
     x
     1. +-utils::capture.output(...) at testModuleHelp.R:24:2
     2. | \-base::withVisible(...elt(i))
     3. \-zoon::ModuleHelp("NoProcess")
     -- Error (testModuleHelp.R:39:3): Help as NULL ---------------------------------
     Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
     Backtrace:
     x
     1. +-utils::capture.output(...) at testModuleHelp.R:39:2
     2. | \-base::withVisible(...elt(i))
     3. \-zoon::ModuleHelp("NoProcess")
     -- Error (testModuleHelp.R:56:3): Help as html ---------------------------------
     Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
     Backtrace:
     x
     1. +-testthat::expect_warning(...) at testModuleHelp.R:56:2
     2. | \-testthat:::quasi_capture(enquo(object), label, capture_warnings)
     3. | +-testthat (local) .capture(...)
     4. | | \-base::withCallingHandlers(...)
     5. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     6. +-utils::capture.output(...)
     7. | \-base::withVisible(...elt(i))
     8. \-zoon::ModuleHelp("NoProcess")
     -- Error (testModuleHelp.R:85:3): Help as pdf ----------------------------------
     Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
     Backtrace:
     x
     1. +-testthat::expect_warning(...) at testModuleHelp.R:85:2
     2. | \-testthat:::quasi_capture(enquo(object), label, capture_warnings)
     3. | +-testthat (local) .capture(...)
     4. | | \-base::withCallingHandlers(...)
     5. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     6. +-utils::capture.output(...)
     7. | \-base::withVisible(...elt(i))
     8. \-zoon::ModuleHelp("NoProcess")
     -- Error (testReplicate.R:27:3): Replicate workflow tests ----------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-zoon::workflow(...) at testReplicate.R:27:2
     2. | \-zoon:::LapplyGetModule(...)
     3. | \-base::lapply(...)
     4. | \-zoon (local) FUN(X[[i]], ...)
     5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     8. \-RCurl (local) `<fn>`(...)
     -- Error (???): SortArgs works. ------------------------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-zoon::workflow(...)
     2. | \-zoon:::LapplyGetModule(...)
     3. | \-base::lapply(...)
     4. | \-zoon (local) FUN(X[[i]], ...)
     5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     8. \-RCurl (local) `<fn>`(...)
     -- Error (testTransformCRS.R:79:3): occurrence data is handled as expected when CRSs vary --
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-testthat::expect_is(...) at testTransformCRS.R:79:2
     2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
     3. | \-rlang::eval_bare(expr, quo_get_env(quo))
     4. +-zoon::workflow(...)
     5. | \-zoon:::LapplyGetModule(covariate.module, forceReproducible, e)
     6. | \-base::lapply(...)
     7. | \-zoon (local) FUN(X[[i]], ...)
     8. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     9. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     10. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     11. \-RCurl (local) `<fn>`(...)
     -- Error (testWriteWorkflowMetadata.R:4:3): WriteWorkflowMetadata works. -------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-zoon::workflow(...) at testWriteWorkflowMetadata.R:4:2
     2. | \-zoon:::LapplyGetModule(...)
     3. | \-base::lapply(...)
     4. | \-zoon (local) FUN(X[[i]], ...)
     5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     8. \-RCurl (local) `<fn>`(...)
     -- Error (testZoonCitation.R:13:3): Check returns list with all the names ------
     Error in `ZoonCitation("LogisticRegression")`: URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/LogisticRegression.R
     Backtrace:
     x
     1. \-zoon::ZoonCitation("LogisticRegression") at testZoonCitation.R:13:2
     -- Error (testaccessors.R:10:3): All accessor functions return objects of the right length and type --
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-zoon::workflow(...) at testaccessors.R:10:2
     2. | \-zoon:::LapplyGetModule(...)
     3. | \-base::lapply(...)
     4. | \-zoon (local) FUN(X[[i]], ...)
     5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
     6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
     7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
     8. \-RCurl (local) `<fn>`(...)
    
     [ FAIL 15 | WARN 5 | SKIP 31 | PASS 122 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64