Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
| Version: |
0.66.0 |
| Depends: |
R (≥ 3.2.0) |
| Imports: |
R.methodsS3 (≥ 1.8.1), R.oo (≥ 1.24.0), R.utils (≥ 2.11.0), R.cache (≥ 0.15.0), matrixStats (≥ 0.61.0), aroma.light (≥
2.4.0), DNAcopy (≥ 1.42.0), listenv (≥ 0.8.0), future (≥
1.22.1), parallel, graphics, grDevices, stats, utils |
| Suggests: |
Hmisc, R.rsp (≥ 0.44.0), R.devices (≥ 2.17.0), ggplot2 (≥
3.2.1) |
| Published: |
2021-10-23 |
| Author: |
Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut],
Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from
Hmisc::wtd.quantile()) |
| Maintainer: |
Henrik Bengtsson <henrikb at braju.com> |
| BugReports: |
https://github.com/HenrikBengtsson/PSCBS/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/HenrikBengtsson/PSCBS |
| NeedsCompilation: |
no |
| Citation: |
PSCBS citation info |
| Materials: |
README NEWS |
| CRAN checks: |
PSCBS results |