PTXQC: Quality Report Generation for MaxQuant and mzTab Results

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.

Version:	1.0.13
Depends:	R (≥ 3.3.0)
Imports:	data.table, ggplot2 (≥ 2.2), ggdendro, grid, grDevices, gtable, htmlTable, jsonlite, knitr (≥ 1.10), magrittr, methods, ontologyIndex, plyr, R6, R6P, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils, UpSetR, xml2, yaml
Suggests:	testthat
Published:	2022-03-22
Author:	Chris Bielow [aut, cre], Juliane Schmachtenberg [ctb], Swenja Wagner [ctb], Patricia Scheil [ctb], Tom Waschischek [ctb], Guido Mastrobuoni [dtc, rev]
Maintainer:	Chris Bielow <chris.bielow at bsc.fu-berlin.de>
BugReports:	https://github.com/cbielow/PTXQC/issues
License:	BSD_3_clause + file LICENSE
URL:	https://github.com/cbielow/PTXQC
NeedsCompilation:	no
SystemRequirements:	pandoc (http://pandoc.org) for building Vignettes and output reports as HTML
Citation:	PTXQC citation info
Materials:	README NEWS
CRAN checks:	PTXQC results

Documentation:

Reference manual:	PTXQC.pdf
Vignettes:	Basic R-Usage Guide for PTXQC Customizing PTXQC reports Drag'n'drop Usage Guide for PTXQC Frequently asked questions for PTXQC Input/Output data for PTXQC List of Metrics

Downloads:

Package source:	PTXQC_1.0.13.tar.gz
Windows binaries:	r-devel: PTXQC_1.0.13.zip, r-release: PTXQC_1.0.13.zip, r-oldrel: PTXQC_1.0.13.zip
macOS binaries:	r-release (arm64): PTXQC_1.0.13.tgz, r-oldrel (arm64): PTXQC_1.0.13.tgz, r-release (x86_64): PTXQC_1.0.13.tgz, r-oldrel (x86_64): PTXQC_1.0.13.tgz
Old sources:	PTXQC archive

Linking:

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