samc: Spatial Absorbing Markov Chains

Implements functions for working with absorbing Markov chains. The implementation is based on the framework described in "Toward a unified framework for connectivity that disentangles movement and mortality in space and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies them to spatial ecology. This framework incorporates both resistance and absorption with spatial absorbing Markov chains (SAMC) to provide several short-term and long-term predictions for metrics related to connectivity in landscapes. Despite the ecological context of the framework, this package can be used in any application of absorbing Markov chains.

Version:	2.0.1
Depends:	R (≥ 3.6.0)
Imports:	methods, gdistance, Matrix, raster
LinkingTo:	Rcpp (≥ 1.0.5), RcppEigen (≥ 0.3.3.9.1), RcppThread (≥ 2.1.3)
Suggests:	knitr, rmarkdown, testthat, viridisLite
Published:	2022-06-11
Author:	Andrew Marx [aut, cre, cph], Robert Fletcher [ctb], Miguel Acevedo [ctb], Jorge Sefair [ctb], Chao Wang [ctb]
Maintainer:	Andrew Marx <ajm.rpackages at gmail.com>
BugReports:	https://github.com/andrewmarx/samc/issues/
License:	GPL (≥ 3)
URL:	https://andrewmarx.github.io/samc/
NeedsCompilation:	yes
Citation:	samc citation info
Materials:	NEWS
CRAN checks:	samc results

Documentation:

Reference manual:	samc.pdf
Vignettes:	Code Snippets Disconnected Data Coin Flip Maze Part 1 Maze Part 2 Maze Part 3 Overview Parallel Computing Performance Troubleshooting Animations Basic Tutorial ggplot Visualization Locations Multiple Absorption Tutorial Temporal Analysis

Downloads:

Package source:	samc_2.0.1.tar.gz
Windows binaries:	r-devel: samc_2.0.1.zip, r-release: samc_2.0.1.zip, r-oldrel: samc_2.0.1.zip
macOS binaries:	r-release (arm64): samc_2.0.1.tgz, r-oldrel (arm64): samc_2.0.1.tgz, r-release (x86_64): samc_2.0.1.tgz, r-oldrel (x86_64): samc_2.0.1.tgz
Old sources:	samc archive

Linking:

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