secr: Spatially Explicit Capture-Recapture

Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.

Version: 4.5.5
Depends: R (≥ 3.5.0), methods
Imports: abind, graphics, grDevices, MASS, utils, parallel, nlme, sf, mgcv, raster (≥ 3.5-15), terra (≥ 1.5-12), stats, tools, stringr, Rcpp (≥ 0.12.14), RcppParallel (≥ 5.1.1), RcppNumerical
LinkingTo: Rcpp, RcppParallel, RcppEigen, RcppNumerical, BH
Suggests: gdistance, knitr, readxl, rmarkdown, sp, testthat, spsurvey (≥ 5.3.0)
Published: 2022-05-31
Author: Murray Efford ORCID iD [aut, cre]
Maintainer: Murray Efford <murray.efford at otago.ac.nz>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/MurrayEfford/secr/, https://www.otago.ac.nz/density/
NeedsCompilation: yes
SystemRequirements: GNU make
Citation: secr citation info
Materials: README NEWS
In views: Environmetrics
CRAN checks: secr results

Documentation:

Reference manual: secr.pdf
Vignettes: Data input for secr
Spatially explicit capture–recapture in R

Downloads:

Package source: secr_4.5.5.tar.gz
Windows binaries: r-devel: secr_4.5.5.zip, r-release: secr_4.5.5.zip, r-oldrel: secr_4.5.5.zip
macOS binaries: r-release (arm64): secr_4.5.5.tgz, r-oldrel (arm64): secr_4.5.5.tgz, r-release (x86_64): secr_4.5.5.tgz, r-oldrel (x86_64): secr_4.5.5.tgz
Old sources: secr archive

Reverse dependencies:

Reverse depends: ipsecr, openCR, secrdesign, secrlinear
Reverse imports: BBRecapture, camtrapR
Reverse suggests: wiqid

Linking:

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