Provides functions to import data from Agilent CGH arrays and process them according to the cghRA workflow. Implements several algorithms such as WACA, STEPS and cnvScore and an interactive graphical interface.
| Version: | 1.6.0 |
| Depends: | methods, Rgb (≥ 1.5.0), R (≥ 2.10) |
| Imports: | DNAcopy, utils, stats |
| Suggests: | tcltk, tkrplot, parallel, GLAD, graphics, grDevices |
| Published: | 2017-03-03 |
| Author: | Sylvain Mareschal |
| Maintainer: | Sylvain Mareschal <maressyl at gmail.com> |
| BugReports: | https://github.com/maressyl/R.cghRA/issues |
| License: | GPL (≥ 3) |
| URL: | http://www.ovsa.fr/cghRA |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | cghRA results |
| Reference manual: | cghRA.pdf |
| Vignettes: |
How-to guide to cghRA |
| Package source: | cghRA_1.6.0.tar.gz |
| Windows binaries: | r-devel: cghRA_1.6.0.zip, r-release: cghRA_1.6.0.zip, r-oldrel: cghRA_1.6.0.zip |
| macOS binaries: | r-release (arm64): cghRA_1.6.0.tgz, r-oldrel (arm64): cghRA_1.6.0.tgz, r-release (x86_64): cghRA_1.6.0.tgz, r-oldrel (x86_64): cghRA_1.6.0.tgz |
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